Literature DB >> 20693694

Enhancing MAD F(A) data for substructure determination.

Hongliang Xu1.   

Abstract

Heavy-atom substructure determination is a critical step in phasing an unknown macromolecular structure. Dual-space (Shake-and-Bake) recycling is a very effective procedure for locating the substructure (heavy) atoms using F(A) data estimated from multiple-wavelength anomalous diffraction. However, the estimated F(A) are susceptible to the accumulation of errors in the individual intensity measurements at several wavelengths and from inaccurate estimation of the anomalous atomic scattering corrections f' and f''. In this paper, a new statistical and computational procedure which merges multiple F(A) estimates into an averaged data set is used to further improve the quality of the estimated anomalous amplitudes. The results of 18 Se-atom substructure determinations provide convincing evidence in favor of using such a procedure to locate anomalous scatterers.

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Year:  2010        PMID: 20693694      PMCID: PMC2917277          DOI: 10.1107/S0907444910025783

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  23 in total

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Authors:  T C Appleby; C Kinsland; T P Begley; S E Ealick
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2.  Crystal structure of 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase from Salmonella typhimurium at 2.3 A resolution.

Authors:  Gong Cheng; Eric M Bennett; Tadhg P Begley; Steven E Ealick
Journal:  Structure       Date:  2002-02       Impact factor: 5.006

3.  Substructure solution with SHELXD.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

4.  Statistical approach to the phase problem.

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Journal:  Acta Crystallogr A       Date:  2004-02-17       Impact factor: 2.290

5.  Structure determination of selenomethionyl S-adenosylhomocysteine hydrolase using data at a single wavelength.

Authors:  M A Turner; C S Yuan; R T Borchardt; M S Hershfield; G D Smith; P L Howell
Journal:  Nat Struct Biol       Date:  1998-05

6.  Degradation pathway of the phosphonate ciliatine: crystal structure of 2-aminoethylphosphonate transaminase.

Authors:  Celia C H Chen; H Zhang; A D Kim; A Howard; G M Sheldrick; D Mariano-Dunaway; O Herzberg
Journal:  Biochemistry       Date:  2002-11-05       Impact factor: 3.162

7.  The structure of reduced tryparedoxin peroxidase reveals a decamer and insight into reactivity of 2Cys-peroxiredoxins.

Authors:  M S Alphey; C S Bond; E Tetaud; A H Fairlamb; W N Hunter
Journal:  J Mol Biol       Date:  2000-07-21       Impact factor: 5.469

8.  The crystal structure of human S-adenosylmethionine decarboxylase at 2.25 A resolution reveals a novel fold.

Authors:  J L Ekstrom; I I Mathews; B A Stanley; A E Pegg; S E Ealick
Journal:  Structure       Date:  1999-05       Impact factor: 5.006

9.  Structure of human adenosine kinase at 1.5 A resolution.

Authors:  I I Mathews; M D Erion; S E Ealick
Journal:  Biochemistry       Date:  1998-11-10       Impact factor: 3.162

10.  X-ray crystal structure of glycinamide ribonucleotide synthetase from Escherichia coli.

Authors:  W Wang; T J Kappock; J Stubbe; S E Ealick
Journal:  Biochemistry       Date:  1998-11-10       Impact factor: 3.162

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