Literature DB >> 15709775

Hydron transfer catalyzed by triosephosphate isomerase. Products of isomerization of dihydroxyacetone phosphate in D2O.

Annmarie C O'Donoghue1, Tina L Amyes, John P Richard.   

Abstract

The product distributions for the reactions of dihydroxyacetone phosphate (DHAP) in D(2)O at pD 7.9 catalyzed by triosephosphate isomerase (TIM) from chicken and rabbit muscle were determined by (1)H NMR spectroscopy using glyceraldehyde 3-phosphate dehydrogenase to trap the first-formed products of the thermodynamically unfavorable isomerization reaction, (R)-glyceraldehyde 3-phosphate (GAP) and [2(R)-(2)H]-GAP (d-GAP). Three products were observed from the reactions catalyzed by TIM: GAP from isomerization with intramolecular transfer of hydrogen (18% of the enzymatic products), d-GAP from isomerization with incorporation of deuterium from D(2)O into C-2 of GAP (43% of the enzymatic products), and [1(R)-(2)H]-DHAP (d-DHAP) from incorporation of deuterium from D(2)O into C-1 of DHAP (40% of the enzymatic products). The ratios of the yields of the deuterium-labeled products d-DHAP and d-GAP from partitioning of the intermediate of the TIM-catalyzed reactions of GAP and DHAP in D(2)O are 1.48 and 0.93, respectively. This provides evidence that the reaction of these two substrates does not proceed through a single, common, reaction intermediate but, rather, through distinct intermediates that differ in the bonding and arrangement of catalytic residues at the enediolate O-1 and O-2 oxyanions formed on deprotonation of GAP and DHAP, respectively.

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Year:  2005        PMID: 15709775     DOI: 10.1021/bi047953k

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  29 in total

1.  A paradigm for enzyme-catalyzed proton transfer at carbon: triosephosphate isomerase.

Authors:  John P Richard
Journal:  Biochemistry       Date:  2012-03-20       Impact factor: 3.162

2.  Hydron transfer catalyzed by triosephosphate isomerase. Products of the direct and phosphite-activated isomerization of [1-(13)C]-glycolaldehyde in D(2)O.

Authors:  Maybelle K Go; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2009-06-23       Impact factor: 3.162

3.  Isopentenyl diphosphate isomerase catalyzed reactions in D2O: product release limits the rate of this sluggish enzyme-catalyzed reaction.

Authors:  Venkatadurga Jonnalagadda; Krisztina Toth; John P Richard
Journal:  J Am Chem Soc       Date:  2012-04-05       Impact factor: 15.419

4.  Role of Lys-12 in catalysis by triosephosphate isomerase: a two-part substrate approach.

Authors:  Maybelle K Go; Astrid Koudelka; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2010-06-29       Impact factor: 3.162

5.  Bovine serum albumin-catalyzed deprotonation of [1-(13)C]glycolaldehyde: protein reactivity toward deprotonation of the alpha-hydroxy alpha-carbonyl carbon.

Authors:  Maybelle K Go; M Merced Malabanan; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2010-09-07       Impact factor: 3.162

6.  Structural mutations that probe the interactions between the catalytic and dianion activation sites of triosephosphate isomerase.

Authors:  Xiang Zhai; Tina L Amyes; Rik K Wierenga; J Patrick Loria; John P Richard
Journal:  Biochemistry       Date:  2013-08-16       Impact factor: 3.162

7.  Reflections on the catalytic power of a TIM-barrel.

Authors:  John P Richard; Xiang Zhai; M Merced Malabanan
Journal:  Bioorg Chem       Date:  2014-07-11       Impact factor: 5.275

Review 8.  Specificity in transition state binding: the Pauling model revisited.

Authors:  Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2013-02-04       Impact factor: 3.162

9.  Phosphate binding energy and catalysis by small and large molecules.

Authors:  Janet R Morrow; Tina L Amyes; John P Richard
Journal:  Acc Chem Res       Date:  2008-02-23       Impact factor: 22.384

10.  Substrate product equilibrium on a reversible enzyme, triosephosphate isomerase.

Authors:  Sharon Rozovsky; Ann E McDermott
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-07       Impact factor: 11.205

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