Literature DB >> 15709774

Hydron transfer catalyzed by triosephosphate isomerase. Products of isomerization of (R)-glyceraldehyde 3-phosphate in D2O.

Annmarie C O'Donoghue1, Tina L Amyes, John P Richard.   

Abstract

The product distributions for the reactions of (R)-glyceraldehyde 3-phosphate (GAP) in D(2)O at pD 7.5-7.9 catalyzed by triosephosphate isomerase (TIM) from chicken and rabbit muscle were determined by (1)H NMR spectroscopy. Three products were observed from the reactions catalyzed by TIM: dihydroxyacetone phosphate (DHAP) from isomerization with intramolecular transfer of hydrogen (49% of the enzymatic products), [1(R)-(2)H]-DHAP from isomerization with incorporation of deuterium from D(2)O into C-1 of DHAP (31% of the enzymatic products), and [2(R)-(2)H]-GAP from incorporation of deuterium from D(2)O into C-2 of GAP (21% of the enzymatic products). The similar yields of [1(R)-(2)H]-DHAP and [2(R)-(2)H]-GAP from partitioning of the enzyme-bound enediol(ate) intermediate between hydron transfer to C-1 and C-2 is consistent with earlier results, which showed that there are similar barriers for conversion of this intermediate to the alpha-hydroxy ketone and aldehyde products (Knowles, J. R., and Albery, W. J. (1977) Acc. Chem. Res. 10, 105-111). However, the observation that the TIM-catalyzed isomerization of GAP in D(2)O proceeds with 49% intramolecular transfer of the (1)H label from substrate to product DHAP stands in sharp contrast with the <or=6% intramolecular transfer of the (3)H label from substrate to product GAP reported for the TIM-catalyzed reaction of [1(R)-(3)H]-DHAP in H(2)O (Herlihy, J. M., Maister, S. G., Albery, W. J., and Knowles, J. R. (1976) Biochemistry 15, 5601-5607). The data show that the hydron bound to the carboxylate side chain of Glu-165 in the TIM-enediol(ate) complex is not in chemical equilibrium with those of bulk solvent.

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Year:  2005        PMID: 15709774     DOI: 10.1021/bi047954c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  34 in total

1.  Mechanism for activation of triosephosphate isomerase by phosphite dianion: the role of a ligand-driven conformational change.

Authors:  M Merced Malabanan; Tina L Amyes; John P Richard
Journal:  J Am Chem Soc       Date:  2011-09-28       Impact factor: 15.419

2.  A paradigm for enzyme-catalyzed proton transfer at carbon: triosephosphate isomerase.

Authors:  John P Richard
Journal:  Biochemistry       Date:  2012-03-20       Impact factor: 3.162

3.  Hydron transfer catalyzed by triosephosphate isomerase. Products of the direct and phosphite-activated isomerization of [1-(13)C]-glycolaldehyde in D(2)O.

Authors:  Maybelle K Go; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2009-06-23       Impact factor: 3.162

4.  Role of Lys-12 in catalysis by triosephosphate isomerase: a two-part substrate approach.

Authors:  Maybelle K Go; Astrid Koudelka; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2010-06-29       Impact factor: 3.162

5.  Bovine serum albumin-catalyzed deprotonation of [1-(13)C]glycolaldehyde: protein reactivity toward deprotonation of the alpha-hydroxy alpha-carbonyl carbon.

Authors:  Maybelle K Go; M Merced Malabanan; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2010-09-07       Impact factor: 3.162

6.  Structural mutations that probe the interactions between the catalytic and dianion activation sites of triosephosphate isomerase.

Authors:  Xiang Zhai; Tina L Amyes; Rik K Wierenga; J Patrick Loria; John P Richard
Journal:  Biochemistry       Date:  2013-08-16       Impact factor: 3.162

7.  Reflections on the catalytic power of a TIM-barrel.

Authors:  John P Richard; Xiang Zhai; M Merced Malabanan
Journal:  Bioorg Chem       Date:  2014-07-11       Impact factor: 5.275

Review 8.  Specificity in transition state binding: the Pauling model revisited.

Authors:  Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2013-02-04       Impact factor: 3.162

9.  Phosphate binding energy and catalysis by small and large molecules.

Authors:  Janet R Morrow; Tina L Amyes; John P Richard
Journal:  Acc Chem Res       Date:  2008-02-23       Impact factor: 22.384

10.  Substrate product equilibrium on a reversible enzyme, triosephosphate isomerase.

Authors:  Sharon Rozovsky; Ann E McDermott
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-07       Impact factor: 11.205

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