Literature DB >> 20683727

Measuring macromolecular diffusion using heteronuclear multiple-quantum pulsed-field-gradient NMR.

A J Dingley1, J P Mackay, G L Shaw, B D Hambly, G F King.   

Abstract

We have previously shown that (1)H pulsed-field-gradient(PFG) NMR spectroscopy provides a facile method for monitoring proteinself-association and can be used, albeit with some caveats, to measure theapparent molecular mass of the diffusant [Dingley et al. (1995) J. Biomol.NMR, 6, 321-328]. In this paper we show that, for(15)N-labelled proteins, selection of(1)H-(15)N multiple-quantum (MQ) coherences in PFGdiffusion experiments provides several advantages over monitoring(1)H single-quantum (SQ) magnetization. First, the use of agradient-selected MQ filter provides a convenient means of suppressingresonances from both the solvent and unlabelled solutes. Second,(1)H-(15)N zero-quantum coherence dephases morerapidly than (1)H SQ coherence under the influence of a PFG.This allows the diffusion coefficients of larger proteins to be measuredmore readily. Alternatively, the gradient length and/or the diffusion delaymay be decreased, thereby reducing signal losses from relaxation. In orderto extend the size of macromolecules to which these experiments can beapplied, we have developed a new MQ PFG diffusion experiment in which themagnetization is stored as longitudinal two-spin order for most of thediffusion period, thus minimizing sensitivity losses due to transverserelaxation and J-coupling evolution.

Entities:  

Year:  1997        PMID: 20683727     DOI: 10.1023/A:1018339526108

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  6 in total

1.  High resolution NMR solution structure of the leucine zipper domain of the c-Jun homodimer.

Authors:  F K Junius; S I O'Donoghue; M Nilges; A S Weiss; G F King
Journal:  J Biol Chem       Date:  1996-06-07       Impact factor: 5.157

2.  Structure of ubiquitin refined at 1.8 A resolution.

Authors:  S Vijay-Kumar; C E Bugg; W J Cook
Journal:  J Mol Biol       Date:  1987-04-05       Impact factor: 5.469

3.  Fluorescence resonance energy transfer within the regulatory light chain of myosin.

Authors:  W Boey; W Huang; B Bennetts; J Sparrow; C Dos Remedios; B Hambly
Journal:  Eur J Biochem       Date:  1994-01-15

4.  Measuring protein self-association using pulsed-field-gradient NMR spectroscopy: application to myosin light chain 2.

Authors:  A J Dingley; J P Mackay; B E Chapman; M B Morris; P W Kuchel; B D Hambly; G F King
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  Protein volumes and hydration effects. The calculations of partial specific volumes, neutron scattering matchpoints and 280-nm absorption coefficients for proteins and glycoproteins from amino acid sequences.

Authors:  S J Perkins
Journal:  Eur J Biochem       Date:  1986-05-15

6.  Cloning, expression, and spectroscopic studies of the Jun leucine zipper domain.

Authors:  L G Riley; F K Junius; M K Swanton; N A Vesper; N K Williams; G F King; A S Weiss
Journal:  Eur J Biochem       Date:  1994-02-01
  6 in total
  6 in total

1.  Protein-ligand interactions measured by 15N-filtered diffusion experiments.

Authors:  M L Tillett; M A Horsfield; L Y Lian; T J Norwood
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

2.  The effects of molecular diffusion in ultrafast two-dimensional nuclear magnetic resonance.

Authors:  Yoav Shrot; Lucio Frydman
Journal:  J Chem Phys       Date:  2008-04-28       Impact factor: 3.488

3.  Translational diffusion of macromolecular assemblies measured using transverse-relaxation-optimized pulsed field gradient NMR.

Authors:  Reto Horst; Arthur L Horwich; Kurt Wüthrich
Journal:  J Am Chem Soc       Date:  2011-09-26       Impact factor: 15.419

4.  Elucidation of spermidine interaction with nucleotide ATP by multiple NMR techniques.

Authors:  Zhiyan Song; Kari J Parker; Idorenyin Enoh; Hua Zhao; Olarongbe Olubajo
Journal:  Magn Reson Chem       Date:  2010-02       Impact factor: 2.447

5.  Heteronuclear NMR investigations of dynamic regions of intact Escherichia coli ribosomes.

Authors:  John Christodoulou; Göran Larsson; Paola Fucini; Sean R Connell; Thelma A Pertinhez; Charlotte L Hanson; Christina Redfield; Knud H Nierhaus; Carol V Robinson; Jürgen Schleucher; Christopher M Dobson
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-19       Impact factor: 11.205

6.  Myosin-catalyzed ATP hydrolysis elucidated by 31P NMR kinetic studies and 1H PFG-diffusion measurements.

Authors:  Zhiyan Song; Kari J Parker; Idorenyin Enoh; Hua Zhao; Olarongbe Olubajo
Journal:  Anal Bioanal Chem       Date:  2009-09-16       Impact factor: 4.142

  6 in total

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