Literature DB >> 20673990

A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response.

Maite Huarte1, Mitchell Guttman, David Feldser, Manuel Garber, Magdalena J Koziol, Daniela Kenzelmann-Broz, Ahmad M Khalil, Or Zuk, Ido Amit, Michal Rabani, Laura D Attardi, Aviv Regev, Eric S Lander, Tyler Jacks, John L Rinn.   

Abstract

Recently, more than 1000 large intergenic noncoding RNAs (lincRNAs) have been reported. These RNAs are evolutionarily conserved in mammalian genomes and thus presumably function in diverse biological processes. Here, we report the identification of lincRNAs that are regulated by p53. One of these lincRNAs (lincRNA-p21) serves as a repressor in p53-dependent transcriptional responses. Inhibition of lincRNA-p21 affects the expression of hundreds of gene targets enriched for genes normally repressed by p53. The observed transcriptional repression by lincRNA-p21 is mediated through the physical association with hnRNP-K. This interaction is required for proper genomic localization of hnRNP-K at repressed genes and regulation of p53 mediates apoptosis. We propose a model whereby transcription factors activate lincRNAs that serve as key repressors by physically associating with repressive complexes and modulate their localization to sets of previously active genes. Copyright 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20673990      PMCID: PMC2956184          DOI: 10.1016/j.cell.2010.06.040

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  32 in total

1.  CLIP: a method for identifying protein-RNA interaction sites in living cells.

Authors:  Jernej Ule; Kirk Jensen; Aldo Mele; Robert B Darnell
Journal:  Methods       Date:  2005-12       Impact factor: 3.608

2.  A global map of p53 transcription-factor binding sites in the human genome.

Authors:  Chia-Lin Wei; Qiang Wu; Vinsensius B Vega; Kuo Ping Chiu; Patrick Ng; Tao Zhang; Atif Shahab; How Choong Yong; YuTao Fu; Zhiping Weng; JianJun Liu; Xiao Dong Zhao; Joon-Lin Chew; Yen Ling Lee; Vladimir A Kuznetsov; Wing-Kin Sung; Lance D Miller; Bing Lim; Edison T Liu; Qiang Yu; Huck-Hui Ng; Yijun Ruan
Journal:  Cell       Date:  2006-01-13       Impact factor: 41.582

3.  Definition of a consensus binding site for p53.

Authors:  W S el-Deiry; S E Kern; J A Pietenpol; K W Kinzler; B Vogelstein
Journal:  Nat Genet       Date:  1992-04       Impact factor: 38.330

4.  hnRNP K: an HDM2 target and transcriptional coactivator of p53 in response to DNA damage.

Authors:  Abdeladim Moumen; Philip Masterson; Mark J O'Connor; Stephen P Jackson
Journal:  Cell       Date:  2005-12-16       Impact factor: 41.582

5.  A novel assay to measure loss of plasma membrane asymmetry during apoptosis of adherent cells in culture.

Authors:  M van Engeland; F C Ramaekers; B Schutte; C P Reutelingsperger
Journal:  Cytometry       Date:  1996-06-01

Review 6.  Revolutions in rapid amplification of cDNA ends: new strategies for polymerase chain reaction cloning of full-length cDNA ends.

Authors:  B C Schaefer
Journal:  Anal Biochem       Date:  1995-05-20       Impact factor: 3.365

7.  The product of the murine homolog of the Drosophila extra sex combs gene displays transcriptional repressor activity.

Authors:  O N Denisenko; K Bomsztyk
Journal:  Mol Cell Biol       Date:  1997-08       Impact factor: 4.272

8.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

Review 9.  The P53 pathway: what questions remain to be explored?

Authors:  A J Levine; W Hu; Z Feng
Journal:  Cell Death Differ       Date:  2006-06       Impact factor: 15.828

10.  Radiation-induced cell cycle arrest compromised by p21 deficiency.

Authors:  J Brugarolas; C Chandrasekaran; J I Gordon; D Beach; T Jacks; G J Hannon
Journal:  Nature       Date:  1995-10-12       Impact factor: 49.962

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  1025 in total

Review 1.  Genome regulation by long noncoding RNAs.

Authors:  John L Rinn; Howard Y Chang
Journal:  Annu Rev Biochem       Date:  2012       Impact factor: 23.643

2.  Annotation of the domestic dog genome sequence: finding the missing genes.

Authors:  Thomas Derrien; Amaury Vaysse; Catherine André; Christophe Hitte
Journal:  Mamm Genome       Date:  2011-11-11       Impact factor: 2.957

Review 3.  Neurodegeneration the RNA way.

Authors:  Abigail J Renoux; Peter K Todd
Journal:  Prog Neurobiol       Date:  2011-11-03       Impact factor: 11.685

Review 4.  Noncoding RNAs involved in mammary gland development and tumorigenesis: there's a long way to go.

Authors:  Amy N Shore; Jason I Herschkowitz; Jeffrey M Rosen
Journal:  J Mammary Gland Biol Neoplasia       Date:  2012-03-09       Impact factor: 2.673

5.  p53-Dependent induction of PVT1 and miR-1204.

Authors:  Anthony M Barsotti; Rachel Beckerman; Oleg Laptenko; Konrad Huppi; Natasha J Caplen; Carol Prives
Journal:  J Biol Chem       Date:  2011-11-22       Impact factor: 5.157

6.  The long noncoding RNA Vax2os1 controls the cell cycle progression of photoreceptor progenitors in the mouse retina.

Authors:  Nicola Meola; Mariateresa Pizzo; Giovanna Alfano; Enrico Maria Surace; Sandro Banfi
Journal:  RNA       Date:  2011-11-29       Impact factor: 4.942

Review 7.  Non-coding RNAs in human disease.

Authors:  Manel Esteller
Journal:  Nat Rev Genet       Date:  2011-11-18       Impact factor: 53.242

8.  A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice.

Authors:  Jihua Ding; Qing Lu; Yidan Ouyang; Hailiang Mao; Pingbo Zhang; Jialing Yao; Caiguo Xu; Xianghua Li; Jinghua Xiao; Qifa Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

Review 9.  Long non-coding RNAs and cancer: a new frontier of translational research?

Authors:  R Spizzo; M I Almeida; A Colombatti; G A Calin
Journal:  Oncogene       Date:  2012-01-23       Impact factor: 9.867

Review 10.  Argonaute and the nuclear RNAs: new pathways for RNA-mediated control of gene expression.

Authors:  Keith T Gagnon; David R Corey
Journal:  Nucleic Acid Ther       Date:  2012-01-27       Impact factor: 5.486

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