Literature DB >> 20673849

Partition-based mass clustering of tractography streamlines.

Eelke Visser1, Emil H J Nijhuis, Jan K Buitelaar, Marcel P Zwiers.   

Abstract

We describe a novel scalable clustering framework for streamlines obtained from diffusion tractography. Clustering is an attractive means of segmenting a large set of streamlines into anatomically relevant bundles. For most existing methods, however, the large datasets produced in high resolution or multiple subject studies are problematical. To achieve good scalability, our method repeatedly divides the data into subsets, which are then partitioned using hierarchical clustering. A final partition is obtained by recombining the subsets. In addition, the recombination scheme provides a consistency measure for cluster assignment of individual streamlines, which is used to clean up the final result. The clusters have good anatomical plausibility and we show that three clusters corresponding to the three known segments of the arcuate fasciculus show excellent agreement with literature. A major advantage of the method is the fact that it can find clusters in datasets of essentially arbitrary size. This fact is exploited to find consistent clusters in concatenated tractography data from multiple subjects. We expect the identification of bundles across subjects to be an important application of the method.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20673849     DOI: 10.1016/j.neuroimage.2010.07.038

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  20 in total

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Journal:  Med Image Anal       Date:  2020-06-24       Impact factor: 8.545

2.  Fast Automatic Segmentation of White Matter Streamlines Based on a Multi-Subject Bundle Atlas.

Authors:  Nicole Labra; Pamela Guevara; Delphine Duclap; Josselin Houenou; Cyril Poupon; Jean-François Mangin; Miguel Figueroa
Journal:  Neuroinformatics       Date:  2017-01

3.  An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan.

Authors:  Fan Zhang; Ye Wu; Isaiah Norton; Laura Rigolo; Yogesh Rathi; Nikos Makris; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2018-06-18       Impact factor: 6.556

4.  Automatic clustering of white matter fibers in brain diffusion MRI with an application to genetics.

Authors:  Yan Jin; Yonggang Shi; Liang Zhan; Boris A Gutman; Greig I de Zubicaray; Katie L McMahon; Margaret J Wright; Arthur W Toga; Paul M Thompson
Journal:  Neuroimage       Date:  2014-05-09       Impact factor: 6.556

5.  ATLAS-BASED FIBER CLUSTERING FOR MULTI-SUBJECT ANALYSIS OF HIGH ANGULAR RESOLUTION DIFFUSION IMAGING TRACTOGRAPHY.

Authors:  Gautam Prasad; Neda Jahanshad; Iman Aganj; Christophe Lenglet; Guillermo Sapiro; Arthur W Toga; Paul M Thompson
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2011-04

6.  Automated tract extraction via atlas based Adaptive Clustering.

Authors:  Birkan Tunç; William A Parker; Madhura Ingalhalikar; Ragini Verma
Journal:  Neuroimage       Date:  2014-08-15       Impact factor: 6.556

7.  Three-dimensional interactive and stereotactic human brain atlas of white matter tracts.

Authors:  Wieslaw L Nowinski; Beng Choon Chua; Guo Liang Yang; Guo Yu Qian
Journal:  Neuroinformatics       Date:  2012-01

8.  Automatic clustering and population analysis of white matter tracts using maximum density paths.

Authors:  Gautam Prasad; Shantanu H Joshi; Neda Jahanshad; Julio Villalon-Reina; Iman Aganj; Christophe Lenglet; Guillermo Sapiro; Katie L McMahon; Greig I de Zubicaray; Nicholas G Martin; Margaret J Wright; Arthur W Toga; Paul M Thompson
Journal:  Neuroimage       Date:  2014-04-18       Impact factor: 6.556

9.  Fiber clustering versus the parcellation-based connectome.

Authors:  Lauren J O'Donnell; Alexandra J Golby; Carl-Fredrik Westin
Journal:  Neuroimage       Date:  2013-04-28       Impact factor: 6.556

10.  AnatomiCuts: Hierarchical clustering of tractography streamlines based on anatomical similarity.

Authors:  Viviana Siless; Ken Chang; Bruce Fischl; Anastasia Yendiki
Journal:  Neuroimage       Date:  2017-11-01       Impact factor: 6.556

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