Literature DB >> 20667823

Loop-sheet mechanism of serpin polymerization tested by reactive center loop mutations.

Masayuki Yamasaki1, Timothy J Sendall, Laura E Harris, Giles M W Lewis, James A Huntington.   

Abstract

The serpin mechanism of protease inhibition involves the rapid and stable incorporation of the reactive center loop (RCL) into central β-sheet A. Serpins therefore require a folding mechanism that bypasses the most stable "loop-inserted" conformation to trap the RCL in an exposed and metastable state. This unusual feature of serpins renders them highly susceptible to point mutations that lead to the accumulation of hyperstable misfolded polymers in the endoplasmic reticulum of secretory cells. The ordered and stable protomer-protomer association in serpin polymers has led to the acceptance of the "loop-sheet" hypothesis of polymerization, where a portion of the RCL of one protomer incorporates in register into sheet A of another. Although this mechanism was proposed 20 years ago, no study has ever been conducted to test its validity. Here, we describe the properties of a variant of α(1)-antitrypsin with a critical hydrophobic section of the RCL substituted with aspartic acid (P8-P6). In contrast to the control, the variant was unable to polymerize when incubated with small peptides or when cleaved in the middle of the RCL (accepted models of loop-sheet polymerization). However, when induced by guanidine HCl or heat, the variant polymerized in a manner indistinguishable from the control. Importantly, the Asp mutations did not affect the ability of the Z or Siiyama α(1)-antitrypsin variants to polymerize in COS-7 cells. These results argue strongly against the loop-sheet hypothesis and suggest that, in serpin polymers, the P8-P6 region is only a small part of an extensive domain swap.

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Year:  2010        PMID: 20667823      PMCID: PMC2945569          DOI: 10.1074/jbc.M110.156042

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  29 in total

1.  Structure of a serpin-protease complex shows inhibition by deformation.

Authors:  J A Huntington; R J Read; R W Carrell
Journal:  Nature       Date:  2000-10-19       Impact factor: 49.962

Review 2.  The serpins are an expanding superfamily of structurally similar but functionally diverse proteins. Evolution, mechanism of inhibition, novel functions, and a revised nomenclature.

Authors:  G A Silverman; P I Bird; R W Carrell; F C Church; P B Coughlin; P G Gettins; J A Irving; D A Lomas; C J Luke; R W Moyer; P A Pemberton; E Remold-O'Donnell; G S Salvesen; J Travis; J C Whisstock
Journal:  J Biol Chem       Date:  2001-07-02       Impact factor: 5.157

3.  Conformation of the reactive site loop of alpha 1-proteinase inhibitor probed by limited proteolysis.

Authors:  A E Mast; J J Enghild; G Salvesen
Journal:  Biochemistry       Date:  1992-03-17       Impact factor: 3.162

4.  Molecular contortionism - on the physical limits of serpin 'loop-sheet' polymers.

Authors:  James A Huntington; James C Whisstock
Journal:  Biol Chem       Date:  2010-08       Impact factor: 3.915

Review 5.  Protein misfolding and the serpinopathies.

Authors:  Didier Belorgey; Peter Hägglöf; Susanna Karlsson-Li; David A Lomas
Journal:  Prion       Date:  2007-01-06       Impact factor: 3.931

6.  A kinetic mechanism for the polymerization of alpha1-antitrypsin.

Authors:  T R Dafforn; R Mahadeva; P R Elliott; P Sivasothy; D A Lomas
Journal:  J Biol Chem       Date:  1999-04-02       Impact factor: 5.157

7.  The Z type variation of human alpha 1-antitrypsin causes a protein folding defect.

Authors:  M H Yu; K N Lee; J Kim
Journal:  Nat Struct Biol       Date:  1995-05

8.  On the size of the active site in proteases. I. Papain.

Authors:  I Schechter; A Berger
Journal:  Biochem Biophys Res Commun       Date:  1967-04-20       Impact factor: 3.575

9.  Kinetic instability of the serpin Z alpha1-antitrypsin promotes aggregation.

Authors:  Anja S Knaupp; Vita Levina; Amy L Robertson; Mary C Pearce; Stephen P Bottomley
Journal:  J Mol Biol       Date:  2009-11-26       Impact factor: 5.469

10.  Plasminogen activator inhibitor-1 polymers, induced by inactivating amphipathic organochemical ligands.

Authors:  Katrine E Pedersen; Anja P Einholm; Anni Christensen; Lotte Schack; Troels Wind; John M Kenney; Peter A Andreasen
Journal:  Biochem J       Date:  2003-06-15       Impact factor: 3.857

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  10 in total

1.  Mutagenesis of the bovSERPINA3-3 demonstrates the requirement of aspartate-371 for intermolecular interaction and formation of dimers.

Authors:  X Blanchet; A Péré-Brissaud; N Duprat; E Pinault; D Delourme; A Ouali; C Combet; A Maftah; P Pélissier; L Brémaud
Journal:  Protein Sci       Date:  2012-05-18       Impact factor: 6.725

2.  The mechanism of fibril formation of a non-inhibitory serpin ovalbumin revealed by the identification of amyloidogenic core regions.

Authors:  Naoki Tanaka; Yumi Morimoto; Yurika Noguchi; Tomoko Tada; Tomonori Waku; Shigeru Kunugi; Takashi Morii; Yin-Fai Lee; Takashi Konno; Nobuyuki Takahashi
Journal:  J Biol Chem       Date:  2010-12-14       Impact factor: 5.157

3.  Small Molecule Probes That Perturb A Protein-protein Interface In Antithrombin.

Authors:  Dongyue Xin; Andreas Holzenburg; Kevin Burgess
Journal:  Chem Sci       Date:  2014-12-01       Impact factor: 9.825

4.  Molecular basis of α1-antitrypsin deficiency revealed by the structure of a domain-swapped trimer.

Authors:  Masayuki Yamasaki; Timothy J Sendall; Mary C Pearce; James C Whisstock; James A Huntington
Journal:  EMBO Rep       Date:  2011-09-30       Impact factor: 8.807

5.  Reactive centre loop mutants of α-1-antitrypsin reveal position-specific effects on intermediate formation along the polymerization pathway.

Authors:  Imran Haq; James A Irving; Sarah V Faull; Jennifer A Dickens; Adriana Ordóñez; Didier Belorgey; Bibek Gooptu; David A Lomas
Journal:  Biosci Rep       Date:  2013-06-25       Impact factor: 3.840

6.  Dynamic local unfolding in the serpin α-1 antitrypsin provides a mechanism for loop insertion and polymerization.

Authors:  Beena Krishnan; Lila M Gierasch
Journal:  Nat Struct Mol Biol       Date:  2011-01-23       Impact factor: 15.369

7.  Therapeutic target-site variability in α1-antitrypsin characterized at high resolution.

Authors:  Anathe O M Patschull; Lakshmi Segu; Mun Peak Nyon; David A Lomas; Irene Nobeli; Tracey E Barrett; Bibek Gooptu
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-11-25

8.  Characterisation of a type II functionally-deficient variant of alpha-1-antitrypsin discovered in the general population.

Authors:  Mattia Laffranchi; Emma L K Elliston; Fabrizio Gangemi; Romina Berardelli; David A Lomas; James A Irving; Annamaria Fra
Journal:  PLoS One       Date:  2019-01-11       Impact factor: 3.752

9.  Functional analysis of novel alpha-1 antitrypsin variants G320R and V321F.

Authors:  Mila Ljujic; Aleksandra Divac Rankov; Snezana Kojic; Elena Miranda; Dragica Radojkovic
Journal:  Mol Biol Rep       Date:  2014-06-27       Impact factor: 2.316

10.  AFM Imaging Reveals Topographic Diversity of Wild Type and Z Variant Polymers of Human α1-Proteinase Inhibitor.

Authors:  Maria Gaczynska; Przemyslaw Karpowicz; Christine E Stuart; Malgorzata G Norton; Jeffrey H Teckman; Ewa Marszal; Pawel A Osmulski
Journal:  PLoS One       Date:  2016-03-23       Impact factor: 3.240

  10 in total

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