Literature DB >> 20665641

Metabolic systems analysis to advance algal biotechnology.

Brian J Schmidt1, Xiefan Lin-Schmidt, Austin Chamberlin, Kourosh Salehi-Ashtiani, Jason A Papin.   

Abstract

Algal fuel sources promise unsurpassed yields in a carbon neutral manner that minimizes resource competition between agriculture and fuel crops. Many challenges must be addressed before algal biofuels can be accepted as a component of the fossil fuel replacement strategy. One significant challenge is that the cost of algal fuel production must become competitive with existing fuel alternatives. Algal biofuel production presents the opportunity to fine-tune microbial metabolic machinery for an optimal blend of biomass constituents and desired fuel molecules. Genome-scale model-driven algal metabolic design promises to facilitate both goals by directing the utilization of metabolites in the complex, interconnected metabolic networks to optimize production of the compounds of interest. Network analysis can direct microbial development efforts towards successful strategies and enable quantitative fine-tuning of the network for optimal product yields while maintaining the robustness of the production microbe. Metabolic modeling yields insights into microbial function, guides experiments by generating testable hypotheses, and enables the refinement of knowledge on the specific organism. While the application of such analytical approaches to algal systems is limited to date, metabolic network analysis can improve understanding of algal metabolic systems and play an important role in expediting the adoption of new biofuel technologies.

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Year:  2010        PMID: 20665641     DOI: 10.1002/biot.201000129

Source DB:  PubMed          Journal:  Biotechnol J        ISSN: 1860-6768            Impact factor:   4.677


  11 in total

1.  Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis.

Authors:  Juan Nogales; Steinn Gudmundsson; Eric M Knight; Bernhard O Palsson; Ines Thiele
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

2.  Metabolic modeling of Chlamydomonas reinhardtii: energy requirements for photoautotrophic growth and maintenance.

Authors:  Anna M J Kliphuis; Anne J Klok; Dirk E Martens; Packo P Lamers; Marcel Janssen; René H Wijffels
Journal:  J Appl Phycol       Date:  2011-04-15       Impact factor: 3.215

3.  Genomics of Volvocine Algae.

Authors:  James G Umen; Bradley J S C Olson
Journal:  Adv Bot Res       Date:  2012       Impact factor: 2.175

4.  TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks.

Authors:  Paul A Jensen; Kyla A Lutz; Jason A Papin
Journal:  BMC Syst Biol       Date:  2011-09-23

5.  AlgaGEM--a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome.

Authors:  Cristiana Gomes de Oliveira Dal'Molin; Lake-Ee Quek; Robin W Palfreyman; Lars K Nielsen
Journal:  BMC Genomics       Date:  2011-12-22       Impact factor: 3.969

6.  Genome-wide functional annotation and structural verification of metabolic ORFeome of Chlamydomonas reinhardtii.

Authors:  Lila Ghamsari; Santhanam Balaji; Yun Shen; Xinping Yang; Dawit Balcha; Changyu Fan; Tong Hao; Haiyuan Yu; Jason A Papin; Kourosh Salehi-Ashtiani
Journal:  BMC Genomics       Date:  2011-06-15       Impact factor: 3.969

7.  Microalgal Metabolic Network Model Refinement through High-Throughput Functional Metabolic Profiling.

Authors:  Amphun Chaiboonchoe; Bushra Saeed Dohai; Hong Cai; David R Nelson; Kenan Jijakli; Kourosh Salehi-Ashtiani
Journal:  Front Bioeng Biotechnol       Date:  2014-12-10

8.  Semi-automated curation of metabolic models via flux balance analysis: a case study with Mycoplasma gallisepticum.

Authors:  Eddy J Bautista; Joseph Zinski; Steven M Szczepanek; Erik L Johnson; Edan R Tulman; Wei-Mei Ching; Steven J Geary; Ranjan Srivastava
Journal:  PLoS Comput Biol       Date:  2013-09-05       Impact factor: 4.475

Review 9.  Metabolic Engineering of Microalgal Based Biofuel Production: Prospects and Challenges.

Authors:  Chiranjib Banerjee; Kashyap K Dubey; Pratyoosh Shukla
Journal:  Front Microbiol       Date:  2016-03-31       Impact factor: 5.640

10.  Development of a Chlamydomonas reinhardtii metabolic network dynamic model to describe distinct phenotypes occurring at different CO2 levels.

Authors:  Daniela Alejandra Mora Salguero; Miguel Fernández-Niño; Luis Miguel Serrano-Bermúdez; David O Páez Melo; Flavia V Winck; Camila Caldana; Andrés Fernando González Barrios
Journal:  PeerJ       Date:  2018-09-03       Impact factor: 2.984

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