Literature DB >> 25883411

Genomics of Volvocine Algae.

James G Umen1, Bradley J S C Olson2.   

Abstract

Volvocine algae are a group of chlorophytes that together comprise a unique model for evolutionary and developmental biology. The species Chlamydomonas reinhardtii and Volvox carteri represent extremes in morphological diversity within the Volvocine clade. Chlamydomonas is unicellular and reflects the ancestral state of the group, while Volvox is multicellular and has evolved numerous innovations including germ-soma differentiation, sexual dimorphism, and complex morphogenetic patterning. The Chlamydomonas genome sequence has shed light on several areas of eukaryotic cell biology, metabolism and evolution, while the Volvox genome sequence has enabled a comparison with Chlamydomonas that reveals some of the underlying changes that enabled its transition to multicellularity, but also underscores the subtlety of this transition. Many of the tools and resources are in place to further develop Volvocine algae as a model for evolutionary genomics.

Entities:  

Year:  2012        PMID: 25883411      PMCID: PMC4396658          DOI: 10.1016/B978-0-12-391499-6.00006-2

Source DB:  PubMed          Journal:  Adv Bot Res        ISSN: 0065-2296            Impact factor:   2.175


  225 in total

1.  Morphogenesis in the family Volvocaceae: different tactics for turning an embryo right-side out.

Authors:  Armin Hallmann
Journal:  Protist       Date:  2006-07-18

2.  Flows driven by flagella of multicellular organisms enhance long-range molecular transport.

Authors:  Martin B Short; Cristian A Solari; Sujoy Ganguly; Thomas R Powers; John O Kessler; Raymond E Goldstein
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-17       Impact factor: 11.205

3.  Gametogenesis in the Chlamydomonas reinhardtii minus mating type is controlled by two genes, MID and MTD1.

Authors:  Huawen Lin; Ursula W Goodenough
Journal:  Genetics       Date:  2007-04-15       Impact factor: 4.562

4.  Physical mapping and characterization of Chlamydomonas mitochondrial DNA molecules: their unique ends, sequence homogeneity, and conservation.

Authors:  D Grant; K S Chiang
Journal:  Plasmid       Date:  1980-07       Impact factor: 3.466

5.  An inorganic carbon transport system responsible for acclimation specific to air levels of CO2 in Chlamydomonas reinhardtii.

Authors:  Yingjun Wang; Martin H Spalding
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-15       Impact factor: 11.205

6.  A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii.

Authors:  Tao Zhao; Guanglin Li; Shijun Mi; Shan Li; Gregory J Hannon; Xiu-Jie Wang; Yijun Qi
Journal:  Genes Dev       Date:  2007-04-30       Impact factor: 11.361

7.  The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.

Authors:  Nicole King; M Jody Westbrook; Susan L Young; Alan Kuo; Monika Abedin; Jarrod Chapman; Stephen Fairclough; Uffe Hellsten; Yoh Isogai; Ivica Letunic; Michael Marr; David Pincus; Nicholas Putnam; Antonis Rokas; Kevin J Wright; Richard Zuzow; William Dirks; Matthew Good; David Goodstein; Derek Lemons; Wanqing Li; Jessica B Lyons; Andrea Morris; Scott Nichols; Daniel J Richter; Asaf Salamov; J G I Sequencing; Peer Bork; Wendell A Lim; Gerard Manning; W Todd Miller; William McGinnis; Harris Shapiro; Robert Tjian; Igor V Grigoriev; Daniel Rokhsar
Journal:  Nature       Date:  2008-02-14       Impact factor: 49.962

8.  The role of GlsA in the evolution of asymmetric cell division in the green alga Volvox carteri.

Authors:  Qian Cheng; Rachel Fowler; Lai-wa Tam; Lisseth Edwards; Stephen M Miller
Journal:  Dev Genes Evol       Date:  2003-05-13       Impact factor: 0.900

9.  Genomewide analysis of box C/D and box H/ACA snoRNAs in Chlamydomonas reinhardtii reveals an extensive organization into intronic gene clusters.

Authors:  Chun-Long Chen; Chong-Jian Chen; Olivier Vallon; Zhan-Peng Huang; Hui Zhou; Liang-Hu Qu
Journal:  Genetics       Date:  2008-05       Impact factor: 4.562

10.  Cell size checkpoint control by the retinoblastoma tumor suppressor pathway.

Authors:  Su-Chiung Fang; Chris de los Reyes; James G Umen
Journal:  PLoS Genet       Date:  2006-08-17       Impact factor: 5.917

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  13 in total

1.  Origins of multicellular complexity: Volvox and the volvocine algae.

Authors:  Matthew D Herron
Journal:  Mol Ecol       Date:  2016-03-01       Impact factor: 6.185

2.  Cell differentiation and germ-soma separation in Ediacaran animal embryo-like fossils.

Authors:  Lei Chen; Shuhai Xiao; Ke Pang; Chuanming Zhou; Xunlai Yuan
Journal:  Nature       Date:  2014-09-24       Impact factor: 49.962

Review 3.  A Series of Fortunate Events: Introducing Chlamydomonas as a Reference Organism.

Authors:  Patrice A Salomé; Sabeeha S Merchant
Journal:  Plant Cell       Date:  2019-06-12       Impact factor: 11.277

Review 4.  Volvox: A simple algal model for embryogenesis, morphogenesis and cellular differentiation.

Authors:  Gavriel Matt; James Umen
Journal:  Dev Biol       Date:  2016-07-19       Impact factor: 3.582

Review 5.  UV Chromosomes and Haploid Sexual Systems.

Authors:  Susana Margarida Coelho; Josselin Gueno; Agnieszka Paulina Lipinska; Jeremy Mark Cock; James G Umen
Journal:  Trends Plant Sci       Date:  2018-07-12       Impact factor: 18.313

6.  Chitin oligosaccharide binding to the lysin motif of a novel type of chitinase from the multicellular green alga, Volvox carteri.

Authors:  Yoshihito Kitaoku; Tamo Fukamizo; Tomoyuki Numata; Takayuki Ohnuma
Journal:  Plant Mol Biol       Date:  2016-11-02       Impact factor: 4.076

7.  The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization.

Authors:  David R Nelson; Basel Khraiwesh; Weiqi Fu; Saleh Alseekh; Ashish Jaiswal; Amphun Chaiboonchoe; Khaled M Hazzouri; Matthew J O'Connor; Glenn L Butterfoss; Nizar Drou; Jillian D Rowe; Jamil Harb; Alisdair R Fernie; Kristin C Gunsalus; Kourosh Salehi-Ashtiani
Journal:  Elife       Date:  2017-06-17       Impact factor: 8.140

8.  Non-model model organisms.

Authors:  James J Russell; Julie A Theriot; Pranidhi Sood; Wallace F Marshall; Laura F Landweber; Lillian Fritz-Laylin; Jessica K Polka; Snezhana Oliferenko; Therese Gerbich; Amy Gladfelter; James Umen; Magdalena Bezanilla; Madeline A Lancaster; Shuonan He; Matthew C Gibson; Bob Goldstein; Elly M Tanaka; Chi-Kuo Hu; Anne Brunet
Journal:  BMC Biol       Date:  2017-06-29       Impact factor: 7.431

9.  Cell-Type Transcriptomes of the Multicellular Green Alga Volvox carteri Yield Insights into the Evolutionary Origins of Germ and Somatic Differentiation Programs.

Authors:  Gavriel Y Matt; James G Umen
Journal:  G3 (Bethesda)       Date:  2018-02-02       Impact factor: 3.154

10.  Multiple Roots of Fruiting Body Formation in Amoebozoa.

Authors:  Falk Hillmann; Gillian Forbes; Silvia Novohradská; Iuliia Ferling; Konstantin Riege; Marco Groth; Martin Westermann; Manja Marz; Thomas Spaller; Thomas Winckler; Pauline Schaap; Gernot Glöckner
Journal:  Genome Biol Evol       Date:  2018-02-01       Impact factor: 3.416

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