Literature DB >> 20662483

Molecular simulation of the DMPC-cholesterol phase diagram.

Frédérick J-M de Meyer1, Ayelet Benjamini, Jocelyn M Rodgers, Yannick Misteli, Berend Smit.   

Abstract

In this paper, we present a coarse-grained model of a hydrated saturated phospholipid bilayer (dimyristoylphosphatidylcholine, DMPC) containing cholesterol that we study using a hybrid dissipative particle dynamics-Monte Carlo method. This approach allows us to reach the time and length scales necessary to study structural and mechanical properties of the bilayer at various temperatures and cholesterol concentrations. The properties studied are the area per lipid, condensation, bilayer thickness, tail order parameters, bending modulus, and area compressibility. Our model quantitatively reproduces most of the experimental effects of cholesterol on these properties and reproduces the main features of the experimental phase and structure diagrams. We also present all-atom simulation results of the system and use these results to further validate the structure of our coarse-grained bilayer. On the basis of the changes in structural properties, we propose a temperature-composition structure diagram, which we compare with the experimental phase and structure diagrams. Attention is paid to the reliability and interpretation of the model and simulation method and of the different experimental techniques. The lateral organization of cholesterol in the bilayer is discussed.

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Year:  2010        PMID: 20662483     DOI: 10.1021/jp103903s

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  25 in total

1.  Effect of cholesterol on the lateral nanoscale dynamics of fluid membranes.

Authors:  Clare L Armstrong; Matthew A Barrett; Arno Hiess; Tim Salditt; John Katsaras; An-Chang Shi; Maikel C Rheinstädter
Journal:  Eur Biophys J       Date:  2012-06-23       Impact factor: 1.733

2.  Modulation of Transmembrane Domain Interactions in Neu Receptor Tyrosine Kinase by Membrane Fluidity and Cholesterol.

Authors:  Muhammad Hasan; Dharmesh Patel; Natalie Ellis; Steven P Brown; Józef R Lewandowski; Ann M Dixon
Journal:  J Membr Biol       Date:  2019-06-20       Impact factor: 1.843

3.  Vibrational spectroscopy of water in hydrated lipid multi-bilayers. I. Infrared spectra and ultrafast pump-probe observables.

Authors:  S M Gruenbaum; J L Skinner
Journal:  J Chem Phys       Date:  2011-08-21       Impact factor: 3.488

4.  Hysteresis and the Cholesterol Dependent Phase Transition in Binary Lipid Mixtures with the Martini Model.

Authors:  Clement Arnarez; Alexis Webb; Eric Rouvière; Edward Lyman
Journal:  J Phys Chem B       Date:  2016-12-15       Impact factor: 2.991

Review 5.  Binding equilibrium and kinetics of membrane-anchored receptors and ligands in cell adhesion: Insights from computational model systems and theory.

Authors:  Thomas R Weikl; Jinglei Hu; Guang-Kui Xu; Reinhard Lipowsky
Journal:  Cell Adh Migr       Date:  2016-06-13       Impact factor: 3.405

Review 6.  Systems biology of cellular membranes: a convergence with biophysics.

Authors:  Morgan Chabanon; Jeanne C Stachowiak; Padmini Rangamani
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2017-05-05

7.  Free energetics of arginine permeation into model DMPC lipid bilayers: coupling of effective counterion concentration and lateral bilayer dimensions.

Authors:  Yuan Hu; Shuching Ou; Sandeep Patel
Journal:  J Phys Chem B       Date:  2013-09-16       Impact factor: 2.991

8.  Vibrational spectroscopy of water in hydrated lipid multi-bilayers. II. Two-dimensional infrared and peak shift observables within different theoretical approximations.

Authors:  Scott M Gruenbaum; Piotr A Pieniazek; J L Skinner
Journal:  J Chem Phys       Date:  2011-10-28       Impact factor: 3.488

9.  Molecular simulation of the effect of cholesterol on lipid-mediated protein-protein interactions.

Authors:  Frédérick J-M de Meyer; Jocelyn M Rodgers; Thomas F Willems; Berend Smit
Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

10.  Plasmodium falciparum erythrocyte-binding antigen 175 triggers a biophysical change in the red blood cell that facilitates invasion.

Authors:  Marion Koch; Katherine E Wright; Oliver Otto; Maik Herbig; Nichole D Salinas; Niraj H Tolia; Timothy J Satchwell; Jochen Guck; Nicholas J Brooks; Jake Baum
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-03       Impact factor: 11.205

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