Literature DB >> 20662090

Digital analysis and sorting of fluorescence lifetime by flow cytometry.

Jessica P Houston1, Mark A Naivar, James P Freyer.   

Abstract

Frequency-domain flow cytometry techniques are combined with modifications to the digital signal-processing capabilities of the open reconfigurable cytometric acquisition system (ORCAS) to analyze fluorescence decay lifetimes and control sorting. Real-time fluorescence lifetime analysis is accomplished by rapidly digitizing correlated, radiofrequency (RF)-modulated detector signals, implementing Fourier analysis programming with ORCAS' digital signal processor (DSP) and converting the processed data into standard cytometric list mode data. To systematically test the capabilities of the ORCAS 50 MS/sec analog-to-digital converter (ADC) and our DSP programming, an error analysis was performed using simulated light scatter and fluorescence waveforms (0.5-25 ns simulated lifetime), pulse widths ranging from 2 to 15 micros, and modulation frequencies from 2.5 to 16.667 MHz. The standard deviations of digitally acquired lifetime values ranged from 0.112 to >2 ns, corresponding to errors in actual phase shifts from 0.0142 degrees to 1.6 degrees. The lowest coefficients of variation (<1%) were found for 10-MHz modulated waveforms having pulse widths of 6 micros and simulated lifetimes of 4 ns. Direct comparison of the digital analysis system to a previous analog phase-sensitive flow cytometer demonstrated similar precision and accuracy on measurements of a range of fluorescent microspheres, unstained cells, and cells stained with three common fluorophores. Sorting based on fluorescence lifetime was accomplished by adding analog outputs to ORCAS and interfacing with a commercial cell sorter with a RF-modulated solid-state laser. Two populations of fluorescent microspheres with overlapping fluorescence intensities but different lifetimes (2 and 7 ns) were separated to approximately 98% purity. Overall, the digital signal acquisition and processing methods we introduce present a simple yet robust approach to phase-sensitive measurements in flow cytometry. The ability to simply and inexpensively implement this system on a commercial flow sorter will allow both better dissemination of this technology and better exploitation of the traditionally underutilized parameter of fluorescence lifetime.

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Year:  2010        PMID: 20662090      PMCID: PMC2930036          DOI: 10.1002/cyto.a.20930

Source DB:  PubMed          Journal:  Cytometry A        ISSN: 1552-4922            Impact factor:   4.355


  13 in total

1.  Open, reconfigurable cytometric acquisition system: ORCAS.

Authors:  Mark A Naivar; Jimmie D Parson; Mark E Wilder; Robert C Habbersett; Bruce S Edwards; Larry Sklar; John P Nolan; Steven W Graves; John C Martin; James H Jett; James P Freyer
Journal:  Cytometry A       Date:  2007-11       Impact factor: 4.355

2.  Differential effects of deuterium oxide on the fluorescence lifetimes and intensities of dyes with different modes of binding to DNA.

Authors:  B L Sailer; A J Nastasi; J G Valdez; J A Steinkamp; H A Crissman
Journal:  J Histochem Cytochem       Date:  1997-02       Impact factor: 2.479

3.  Interactions of intercalating fluorochromes with DNA analyzed by conventional and fluorescence lifetime flow cytometry utilizing deuterium oxide.

Authors:  B L Sailer; A J Nastasi; J G Valdez; J A Steinkamp; H A Crissman
Journal:  Cytometry       Date:  1996-10-01

4.  Phase-resolved fluorescence lifetime measurements for flow cytometry.

Authors:  B G Pinsky; J J Ladasky; J R Lakowicz; K Berndt; R A Hoffman
Journal:  Cytometry       Date:  1993

5.  Simultaneous dual-frequency phase-sensitive flow cytometric measurements for rapid identification of heterogeneous fluorescence decays in fluorochrome-labeled cells and particles.

Authors:  C Deka; L S Cram; R Habbersett; J C Martin; L A Sklar; J A Steinkamp
Journal:  Cytometry       Date:  1995-12-01

6.  Apoptosis induced with different cycle-perturbing agents produces differential changes in the fluorescence lifetime of DNA-bound ethidium bromide.

Authors:  B L Sailer; J G Valdez; J A Steinkamp; H A Crissman
Journal:  Cytometry       Date:  1998-03-01

7.  Analysis of fluorescence lifetime and quenching of FITC-conjugated antibodies on cells by phase-sensitive flow cytometry.

Authors:  C Deka; B E Lehnert; N M Lehnert; G M Jones; L A Sklar; J A Steinkamp
Journal:  Cytometry       Date:  1996-11-01

8.  Fluorescence lifetime-based discrimination and quantification of cellular DNA and RNA with phase-sensitive flow cytometry.

Authors:  H Helen Cui; Joseph G Valdez; John A Steinkamp; Harry A Crissman
Journal:  Cytometry A       Date:  2003-03       Impact factor: 4.355

9.  Microenvironmental regulation of proliferation in multicellular spheroids is mediated through differential expression of cyclin-dependent kinase inhibitors.

Authors:  Karen E A LaRue; Mona Khalil; James P Freyer
Journal:  Cancer Res       Date:  2004-03-01       Impact factor: 12.701

10.  Resolution of fluorescence signals from cells labeled with fluorochromes having different lifetimes by phase-sensitive flow cytometry.

Authors:  J A Steinkamp; H A Crissman
Journal:  Cytometry       Date:  1993
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  24 in total

1.  Toward the measurement of multiple fluorescence lifetimes in flow cytometry: maximizing multi-harmonic content from cells and microspheres.

Authors:  Patrick Jenkins; Mark A Naivar; Jessica P Houston
Journal:  J Biophotonics       Date:  2015-02-26       Impact factor: 3.207

2.  Cytometric sorting based on the fluorescence lifetime of spectrally overlapping signals.

Authors:  Ruofan Cao; Varayini Pankayatselvan; Jessica P Houston
Journal:  Opt Express       Date:  2013-06-17       Impact factor: 3.894

3.  Subcellular localization-dependent changes in EGFP fluorescence lifetime measured by time-resolved flow cytometry.

Authors:  Ali Vaziri Gohar; Ruofan Cao; Patrick Jenkins; Wenyan Li; Jessica P Houston; Kevin D Houston
Journal:  Biomed Opt Express       Date:  2013-07-19       Impact factor: 3.732

4.  Directed evolution of excited state lifetime and brightness in FusionRed using a microfluidic sorter.

Authors:  Premashis Manna; Sheng-Ting Hung; Srijit Mukherjee; Pia Friis; David M Simpson; Maria N Lo; Amy E Palmer; Ralph Jimenez
Journal:  Integr Biol (Camb)       Date:  2018-09-17       Impact factor: 2.192

5.  Phasor plotting with frequency-domain flow cytometry.

Authors:  Ruofan Cao; Patrick Jenkins; William Peria; Bryan Sands; Mark Naivar; Roger Brent; Jessica P Houston
Journal:  Opt Express       Date:  2016-06-27       Impact factor: 3.894

Review 6.  Critical Review: digital resolution biomolecular sensing for diagnostics and life science research.

Authors:  Qinglan Huang; Nantao Li; Hanyuan Zhang; Congnyu Che; Fu Sun; Yanyu Xiong; Taylor D Canady; Brian T Cunningham
Journal:  Lab Chip       Date:  2020-07-23       Impact factor: 6.799

7.  Clinical significance of 5-(and 6)-carboxyfluorescein diacetate succinimidyl ester-labeled microspheres for detecting endothelial progenitor cells in human peripheral blood.

Authors:  Chaolin Qiu; Denghai Zhang; Yongbin Chi; Qing Chen; Limin Xu; Qiuhua Xie
Journal:  Exp Ther Med       Date:  2017-06-23       Impact factor: 2.447

8.  Directed molecular evolution to design advanced red fluorescent proteins.

Authors:  Fedor V Subach; Kiryl D Piatkevich; Vladislav V Verkhusha
Journal:  Nat Methods       Date:  2011-11-29       Impact factor: 28.547

Review 9.  The intersection of flow cytometry with microfluidics and microfabrication.

Authors:  Menake E Piyasena; Steven W Graves
Journal:  Lab Chip       Date:  2014-03-21       Impact factor: 6.799

10.  Capture of Fluorescence Decay Times by Flow Cytometry.

Authors:  Jessica P Houston; Mark A Naivar; Patrick Jenkins; James P Freyer
Journal:  Curr Protoc Cytom       Date:  2012
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