Literature DB >> 20662005

The human peripheral subunit-binding domain folds rapidly while overcoming repulsive Coulomb forces.

Eyal Arbely1, Hannes Neuweiler, Timothy D Sharpe, Christopher M Johnson, Alan R Fersht.   

Abstract

Peripheral subunit binding domains (PSBDs) are integral parts of large multienzyme complexes involved in carbohydrate metabolism. PSBDs facilitate shuttling of prosthetic groups between different catalytic subunits. Their protein surface is characterized by a high density of positive charges required for binding to subunits within the complex. Here, we investigated folding thermodynamics and kinetics of the human PSBD (HSBD) using circular dichroism and tryptophan fluorescence experiments. HSBD was only marginally stable under physiological solvent conditions but folded within microseconds via a barrier-limited apparent two-state transition, analogous to its bacterial homologues. The high positive surface-charge density of HSBD leads to repulsive Coulomb forces that modulate protein stability and folding kinetics, and appear to even induce native-state movement. The electrostatic strain was alleviated at high solution-ionic-strength by Debye-Hückel screening. Differences in ionic-strength dependent characteristics among PSBD homologues could be explained by differences in their surface charge distributions. The findings highlight the trade-off between protein function and stability during protein evolution.
Copyright © 2010 The Protein Society.

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Year:  2010        PMID: 20662005      PMCID: PMC2975134          DOI: 10.1002/pro.453

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  24 in total

1.  The cooperativity of burst phase reactions explored.

Authors:  M J Parker; S Marqusee
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Review 2.  Swinging arms and swinging domains in multifunctional enzymes: catalytic machines for multistep reactions.

Authors:  R N Perham
Journal:  Annu Rev Biochem       Date:  2000       Impact factor: 23.643

3.  One-state downhill versus conventional protein folding.

Authors:  Neil Ferguson; Pamela J Schartau; Timothy D Sharpe; Satoshi Sato; Alan R Fersht
Journal:  J Mol Biol       Date:  2004-11-19       Impact factor: 5.469

4.  Simulation and experiment at high temperatures: ultrafast folding of a thermophilic protein by nucleation-condensation.

Authors:  Neil Ferguson; Ryan Day; Christopher M Johnson; Mark D Allen; Valerie Daggett; Alan R Fersht
Journal:  J Mol Biol       Date:  2005-04-08       Impact factor: 5.469

5.  Effect of active site residues in barnase on activity and stability.

Authors:  E M Meiering; L Serrano; A R Fersht
Journal:  J Mol Biol       Date:  1992-06-05       Impact factor: 5.469

6.  Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition.

Authors:  S E Jackson; A R Fersht
Journal:  Biochemistry       Date:  1991-10-29       Impact factor: 3.162

7.  Cooperative folding of a protein mini domain: the peripheral subunit-binding domain of the pyruvate dehydrogenase multienzyme complex.

Authors:  S Spector; B Kuhlman; R Fairman; E Wong; J A Boice; D P Raleigh
Journal:  J Mol Biol       Date:  1998-02-20       Impact factor: 5.469

8.  Protein stability as a function of denaturant concentration: the thermal stability of barnase in the presence of urea.

Authors:  C M Johnson; A R Fersht
Journal:  Biochemistry       Date:  1995-05-23       Impact factor: 3.162

9.  Direct observation of ultrafast folding and denatured state dynamics in single protein molecules.

Authors:  Hannes Neuweiler; Christopher M Johnson; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-19       Impact factor: 11.205

10.  Interactions of the peripheral subunit-binding domain of the dihydrolipoyl acetyltransferase component in the assembly of the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus.

Authors:  Hyo-Il Jung; Alan Cooper; Richard N Perham
Journal:  Eur J Biochem       Date:  2003-11
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  2 in total

Review 1.  Electrostatic Interactions in Protein Structure, Folding, Binding, and Condensation.

Authors:  Huan-Xiang Zhou; Xiaodong Pang
Journal:  Chem Rev       Date:  2018-01-10       Impact factor: 60.622

2.  Engineered solubility tag for solution NMR of proteins.

Authors:  Amy M Ruschak; Justine D Rose; Michael P Coughlin; Tomasz L Religa
Journal:  Protein Sci       Date:  2013-09-20       Impact factor: 6.725

  2 in total

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