Literature DB >> 20656648

Unsupervised segmentation of overlapped nuclei using Bayesian classification.

Chanho Jung1, Changick Kim, Seoung Wan Chae, Sukjoong Oh.   

Abstract

In a fully automatic cell extraction process, one of the main issues to overcome is the problem related to extracting overlapped nuclei since such nuclei will often affect the quantitative analysis of cell images. In this paper, we present an unsupervised Bayesian classification scheme for separating overlapped nuclei. The proposed approach first involves applying the distance transform to overlapped nuclei. The topographic surface generated by distance transform is viewed as a mixture of Gaussians in the proposed algorithm. In order to learn the distribution of the topographic surface, the parametric expectation-maximization (EM) algorithm is employed. Cluster validation is performed to determine how many nuclei are overlapped. Our segmentation approach incorporates a priori knowledge about the regular shape of clumped nuclei to yield more accurate segmentation results. Experimental results show that the proposed method yields superior segmentation performance, compared to those produced by conventional schemes.

Mesh:

Year:  2010        PMID: 20656648     DOI: 10.1109/TBME.2010.2060486

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  17 in total

1.  A quantitative analytic pipeline for evaluating neuronal activities by high-throughput synaptic vesicle imaging.

Authors:  Jing Fan; Xiaofeng Xia; Ying Li; Jennifer G Dy; Stephen T C Wong
Journal:  Neuroimage       Date:  2012-06-23       Impact factor: 6.556

2.  Correlation Filters for Detection of Cellular Nuclei in Histopathology Images.

Authors:  Asif Ahmad; Amina Asif; Nasir Rajpoot; Muhammad Arif; Fayyaz Ul Amir Afsar Minhas
Journal:  J Med Syst       Date:  2017-11-21       Impact factor: 4.460

3.  Glioma Grading Using Cell Nuclei Morphologic Features in Digital Pathology Images.

Authors:  Syed M S Reza; Khan M Iftekharuddin
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-24

Review 4.  Robust Nucleus/Cell Detection and Segmentation in Digital Pathology and Microscopy Images: A Comprehensive Review.

Authors:  Fuyong Xing; Lin Yang
Journal:  IEEE Rev Biomed Eng       Date:  2016-01-06

5.  A flexible and robust approach for segmenting cell nuclei from 2D microscopy images using supervised learning and template matching.

Authors:  Cheng Chen; Wei Wang; John A Ozolek; Gustavo K Rohde
Journal:  Cytometry A       Date:  2013-04-08       Impact factor: 4.355

6.  Automatic cellularity assessment from post-treated breast surgical specimens.

Authors:  Mohammad Peikari; Sherine Salama; Sharon Nofech-Mozes; Anne L Martel
Journal:  Cytometry A       Date:  2017-10-04       Impact factor: 4.355

7.  Smart markers for watershed-based cell segmentation.

Authors:  Can Fahrettin Koyuncu; Salim Arslan; Irem Durmaz; Rengul Cetin-Atalay; Cigdem Gunduz-Demir
Journal:  PLoS One       Date:  2012-11-12       Impact factor: 3.240

8.  Data cluster analysis-based classification of overlapping nuclei in Pap smear samples.

Authors:  Mustafa Guven; Caglar Cengizler
Journal:  Biomed Eng Online       Date:  2014-12-09       Impact factor: 2.819

9.  3D Reconstruction of Coronary Artery Vascular Smooth Muscle Cells.

Authors:  Tong Luo; Huan Chen; Ghassan S Kassab
Journal:  PLoS One       Date:  2016-02-16       Impact factor: 3.240

Review 10.  Computer-based image analysis in breast pathology.

Authors:  Ziba Gandomkar; Patrick C Brennan; Claudia Mello-Thoms
Journal:  J Pathol Inform       Date:  2016-10-21
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