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Literature DB >> 20639333

Complete genome sequence of Croceibacter atlanticus HTCC2559T.

Hyun-Myung Oh¹, Ilnam Kang, Steve Ferriera, Stephen J Giovannoni, Jang-Cheon Cho.

Abstract

Here we announce the complete genome sequence of Croceibacter atlanticus HTCC2559(T), which was isolated by high-throughput dilution-to-extinction culturing from the Bermuda Atlantic Time Series station in the Western Sargasso Sea. Strain HTCC2559(T) contained genes for carotenoid biosynthesis, flavonoid biosynthesis, and several macromolecule-degrading enzymes. The genome confirmed physiological observations of cultivated Croceibacter atlanticus strain HTCC2559(T), which identified it as an obligate chemoheterotroph.

Entities: Chemical Species

Mesh：

Year: 2010 PMID： 20639333 PMCID： PMC2937408 DOI： 10.1128/JB.00733-10

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

15 in total

1. Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter.

Authors: M T Cottrell; D L Kirchman
Journal: Appl Environ Microbiol Date: 2000-04 Impact factor: 4.792

2. Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization.

Authors: F O Glöckner; B M Fuchs; R Amann
Journal: Appl Environ Microbiol Date: 1999-08 Impact factor: 4.792

3. GenDB--an open source genome annotation system for prokaryote genomes.

Authors: Folker Meyer; Alexander Goesmann; Alice C McHardy; Daniela Bartels; Thomas Bekel; Jörn Clausen; Jörn Kalinowski; Burkhard Linke; Oliver Rupp; Robert Giegerich; Alfred Pühler
Journal: Nucleic Acids Res Date: 2003-04-15 Impact factor: 16.971

4. Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family.

Authors: Jean-Francois Bernardet; Yasuyoshi Nakagawa; Barry Holmes
Journal: Int J Syst Evol Microbiol Date: 2002-05 Impact factor: 2.747

Review 5. The chalcone synthase superfamily of type III polyketide synthases.

Authors: Michael B Austin; Joseph P Noel
Journal: Nat Prod Rep Date: 2003-02 Impact factor: 13.423

6. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates.

Authors: Stephanie A Connon; Stephen J Giovannoni
Journal: Appl Environ Microbiol Date: 2002-08 Impact factor: 4.792

7. Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter.

Authors: Margarete Bauer; Michael Kube; Hanno Teeling; Michael Richter; Thierry Lombardot; Elke Allers; Chris A Würdemann; Christian Quast; Heiner Kuhl; Florian Knaust; Dagmar Woebken; Kerstin Bischof; Marc Mussmann; Jomuna V Choudhuri; Folker Meyer; Richard Reinhardt; Rudolf I Amann; Frank Oliver Glöckner
Journal: Environ Microbiol Date: 2006-12 Impact factor: 5.491

8. Organization of the Bacillus subtilis 168 chromosome between kdg and the attachment site of the SP beta prophage: use of Long Accurate PCR and yeast artificial chromosomes for sequencing.

Authors: V Capuano; N Galleron; P Pujic; A Sorokin; S D Ehrlich
Journal: Microbiology Date: 1996-11 Impact factor: 2.777

Complete genome sequence of Croceibacter atlanticus HTCC2559T.

1. Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter.

2. Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization.

3. GenDB--an open source genome annotation system for prokaryote genomes.

4. Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family.

Review 5. The chalcone synthase superfamily of type III polyketide synthases.

6. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates.

7. Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter.

8. Organization of the Bacillus subtilis 168 chromosome between kdg and the attachment site of the SP beta prophage: use of Long Accurate PCR and yeast artificial chromosomes for sequencing.

9. Culturability and In situ abundance of pelagic bacteria from the North Sea.

10. Croceibacter atlanticus gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae.

1. Complete genome sequence of Algoriphagus sp. PR1, bacterial prey of a colony-forming choanoflagellate.

2. Draft genome sequence of the novel agar-digesting marine bacterium HQM9.

3. Complete genome sequence of Croceibacter bacteriophage P2559S.

4. Gliding motility and Por secretion system genes are widespread among members of the phylum bacteroidetes.

Review 5. Molecular evolution of hydrogen peroxide degrading enzymes.

6. Environmental and gut bacteroidetes: the food connection.