Literature DB >> 21183675

Complete genome sequence of Algoriphagus sp. PR1, bacterial prey of a colony-forming choanoflagellate.

Rosanna A Alegado1, Steven Ferriera, Chad Nusbaum, Sarah K Young, Qian Zeng, Alma Imamovic, Stephen R Fairclough, Nicole King.   

Abstract

Bacteria are the primary food source of choanoflagellates, the closest known relatives of animals. Studying signaling interactions between the Gram-negative Bacteroidetes bacterium Algoriphagus sp. PR1 and its predator, the choanoflagellate Salpingoeca rosetta, provides a promising avenue for testing hypotheses regarding the involvement of bacteria in animal evolution. Here we announce the complete genome sequence of Algoriphagus sp. PR1 and initial findings from its annotation.

Entities:  

Mesh：

Substances：

Year:  2010        PMID： 21183675      PMCID： PMC3067637          DOI： 10.1128/JB.01421-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  21 in total

1.  Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization.

Authors:  F O Glöckner; B M Fuchs; R Amann
Journal:  Appl Environ Microbiol       Date:  1999-08       Impact factor: 4.792

2.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

3.  Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter.

Authors:  Margarete Bauer; Michael Kube; Hanno Teeling; Michael Richter; Thierry Lombardot; Elke Allers; Chris A Würdemann; Christian Quast; Heiner Kuhl; Florian Knaust; Dagmar Woebken; Kerstin Bischof; Marc Mussmann; Jomuna V Choudhuri; Folker Meyer; Richard Reinhardt; Rudolf I Amann; Frank Oliver Glöckner
Journal:  Environ Microbiol       Date:  2006-12       Impact factor: 5.491

4.  Complete genome sequence of the fish pathogen Flavobacterium psychrophilum.

Authors:  Eric Duchaud; Mekki Boussaha; Valentin Loux; Jean-François Bernardet; Christian Michel; Brigitte Kerouault; Stanislas Mondot; Pierre Nicolas; Robert Bossy; Christophe Caron; Philippe Bessières; Jean-François Gibrat; Stéphane Claverol; Fabien Dumetz; Michel Le Hénaff; Abdenour Benmansour
Journal:  Nat Biotechnol       Date:  2007-06-24       Impact factor: 54.908

5.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

6.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

7.  Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii.

Authors:  Gary Xie; David C Bruce; Jean F Challacombe; Olga Chertkov; John C Detter; Paul Gilna; Cliff S Han; Susan Lucas; Monica Misra; Gerald L Myers; Paul Richardson; Roxanne Tapia; Nina Thayer; Linda S Thompson; Thomas S Brettin; Bernard Henrissat; David B Wilson; Mark J McBride
Journal:  Appl Environ Microbiol       Date:  2007-03-30       Impact factor: 4.792

8.  Pfam: clans, web tools and services.

Authors:  Robert D Finn; Jaina Mistry; Benjamin Schuster-Böckler; Sam Griffiths-Jones; Volker Hollich; Timo Lassmann; Simon Moxon; Mhairi Marshall; Ajay Khanna; Richard Durbin; Sean R Eddy; Erik L L Sonnhammer; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

9.  MetaGene: prokaryotic gene finding from environmental genome shotgun sequences.

Authors:  Hideki Noguchi; Jungho Park; Toshihisa Takagi
Journal:  Nucleic Acids Res       Date:  2006-10-05       Impact factor: 16.971

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
View more
  12 in total

1.  Bacterial lipids activate, synergize, and inhibit a developmental switch in choanoflagellates.

Authors:  Arielle Woznica; Alexandra M Cantley; Christine Beemelmanns; Elizaveta Freinkman; Jon Clardy; Nicole King
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-27       Impact factor: 11.205

2.  Gene family innovation, conservation and loss on the animal stem lineage.

Authors:  Daniel J Richter; Parinaz Fozouni; Michael B Eisen; Nicole King
Journal:  Elife       Date:  2018-05-31       Impact factor: 8.140

3.  Comparative metagenomics of two microbial mats at Cuatro Ciénegas Basin II: community structure and composition in oligotrophic environments.

Authors:  Germán Bonilla-Rosso; Mariana Peimbert; Luis David Alcaraz; Ismael Hernández; Luis E Eguiarte; Gabriela Olmedo-Alvarez; Valeria Souza
Journal:  Astrobiology       Date:  2012-07       Impact factor: 4.335

4.  Genome sequence of the alkaliphilic bacterium Nitritalea halalkaliphila type strain LW7, isolated from Lonar Lake, India.

Authors:  Pramod Kumar Jangir; Ajit Singh; S Shivaji; Rakesh Sharma
Journal:  J Bacteriol       Date:  2012-10       Impact factor: 3.490

5.  The conserved Candida albicans CA3427 gene product defines a new family of proteins exhibiting the generic periplasmic binding protein structural fold.

Authors:  Sébastien Santini; Jean-Michel Claverie; Nicolas Mouz; Tristan Rousselle; Caroline Maza; Vincent Monchois; Chantal Abergel
Journal:  PLoS One       Date:  2011-04-11       Impact factor: 3.240

6.  Unsupervised discovery of microbial population structure within metagenomes using nucleotide base composition.

Authors:  Isaam Saeed; Sen-Lin Tang; Saman K Halgamuge
Journal:  Nucleic Acids Res       Date:  2011-12-17       Impact factor: 16.971

7.  Synthesis of the rosette-inducing factor RIF-1 and analogs.

Authors:  Christine Beemelmanns; Arielle Woznica; Rosanna A Alegado; Alexandra M Cantley; Nicole King; Jon Clardy
Journal:  J Am Chem Soc       Date:  2014-07-10       Impact factor: 15.419

8.  Complete Genome Sequence of Algoriphagus sp. Strain M8-2, Isolated from a Brackish Lake.

Authors:  Yusuke Muraguchi; Koya Kushimoto; Yoshiyuki Ohtsubo; Tomohiro Suzuki; Hideo Dohra; Kazuhide Kimbara; Masaki Shintani
Journal:  Genome Announc       Date:  2016-05-12

9.  Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions.

Authors:  Jessica K Cole; Janine R Hutchison; Ryan S Renslow; Young-Mo Kim; William B Chrisler; Heather E Engelmann; Alice C Dohnalkova; Dehong Hu; Thomas O Metz; Jim K Fredrickson; Stephen R Lindemann
Journal:  Front Microbiol       Date:  2014-04-07       Impact factor: 5.640

10.  Halotolerant microbial consortia able to degrade highly recalcitrant plant biomass substrate.

Authors:  Larisa Cortes-Tolalpa; Justin Norder; Jan Dirk van Elsas; Joana Falcao Salles
Journal:  Appl Microbiol Biotechnol       Date:  2018-02-03       Impact factor: 4.813
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.