Literature DB >> 21725015

Draft genome sequence of the novel agar-digesting marine bacterium HQM9.

Zongjun Du1, Zhewen Zhang, Tingting Miao, Jiayan Wu, Guoqiang Lü, Jun Yu, Jingfa Xiao, Guanjun Chen.   

Abstract

Strain HQM9, an aerobic, rod-shaped marine bacterium from red algae, can produce agarases and liquefy solid plating media efficiently when agar is used as a coagulant. Here we report the draft genome sequence and the initial findings from a preliminary analysis of strain HQM9, which should be a novel species of Flavobacteriaceae.

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Year:  2011        PMID： 21725015      PMCID： PMC3165531          DOI： 10.1128/JB.05513-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  20 in total

1.  GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Authors:  J Besemer; A Lomsadze; M Borodovsky
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

2.  Rfam: an RNA family database.

Authors:  Sam Griffiths-Jones; Alex Bateman; Mhairi Marshall; Ajay Khanna; Sean R Eddy
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

4.  Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter.

Authors:  Margarete Bauer; Michael Kube; Hanno Teeling; Michael Richter; Thierry Lombardot; Elke Allers; Chris A Würdemann; Christian Quast; Heiner Kuhl; Florian Knaust; Dagmar Woebken; Kerstin Bischof; Marc Mussmann; Jomuna V Choudhuri; Folker Meyer; Richard Reinhardt; Rudolf I Amann; Frank Oliver Glöckner
Journal:  Environ Microbiol       Date:  2006-12       Impact factor: 5.491

5.  Cloning, characterization, and molecular application of a beta-agarase gene from Vibrio sp. strain V134.

Authors:  Wei-wei Zhang; Li Sun
Journal:  Appl Environ Microbiol       Date:  2007-03-02       Impact factor: 4.792

6.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

7.  Flavobacterium frigidarium sp. nov., an aerobic, psychrophilic, xylanolytic and laminarinolytic bacterium from Antarctica.

Authors:  D R Humphry; A George; G W Black; S P Cummings
Journal:  Int J Syst Evol Microbiol       Date:  2001-07       Impact factor: 2.747

8.  Complete genome sequence of Croceibacter atlanticus HTCC2559T.

Authors:  Hyun-Myung Oh; Ilnam Kang; Steve Ferriera; Stephen J Giovannoni; Jang-Cheon Cho
Journal:  J Bacteriol       Date:  2010-07-16       Impact factor: 3.490

9.  The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation.

Authors:  Qi-Long Qin; Xi-Ying Zhang; Xu-Min Wang; Gui-Ming Liu; Xiu-Lan Chen; Bin-Bin Xie; Hong-Yue Dang; Bai-Cheng Zhou; Jun Yu; Yu-Zhong Zhang
Journal:  BMC Genomics       Date:  2010-04-17       Impact factor: 3.969

10.  Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845).

Authors:  Konstantinos Mavrommatis; Sabine Gronow; Elizabeth Saunders; Miriam Land; Alla Lapidus; Alex Copeland; Tijana Glavina Del Rio; Matt Nolan; Susan Lucas; Feng Chen; Hope Tice; Jan-Fang Cheng; David Bruce; Lynne Goodwin; Sam Pitluck; Amrita Pati; Natalia Ivanova; Amy Chen; Krishna Palaniappan; Patrick Chain; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Thomas Brettin; John C Detter; Cliff Han; James Bristow; Markus Göker; Manfred Rohde; Jonathan A Eisen; Victor Markowitz; Nikos C Kyrpides; Hans-Peter Klenk; Philip Hugenholtz
Journal:  Stand Genomic Sci       Date:  2009-09-24
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  1 in total

1.  Bioinformatics analysis of bacterial annexins--putative ancestral relatives of eukaryotic annexins.

Authors:  Praveen Kumar Kodavali; Małgorzata Dudkiewicz; Sławomir Pikuła; Krzysztof Pawłowski
Journal:  PLoS One       Date:  2014-01-16       Impact factor: 3.240
  1 in total

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