Literature DB >> 20638837

Bursts and pulses: insights from single cell studies into transcriptional mechanisms.

Jonathan R Chubb1, Tanniemola B Liverpool.   

Abstract

With a developing appreciation of how noisy gene expression can be, and difficulties in deciphering conventional gene expression data into cell control mechanisms, it has become clear that single cell techniques for measuring transcription are necessary to illuminate basic cell regulation strategies. The resultant use of in situ hybridisation and live cell RNA visualisation approaches in single cells revealed transcription is not adequately reflected by the smooth, seamless process we tend to infer from standard measures of RNA level. When RNA production is measured in single cells, the process of transcription has been shown to occur in bursts, or pulses. This review will highlight the evidence for these phenomena, the proposed mechanisms underlying discontinuity, and the biological implications of such behaviour.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20638837     DOI: 10.1016/j.gde.2010.06.009

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  35 in total

Review 1.  Transcriptional activators and activation mechanisms.

Authors:  Jun Ma
Journal:  Protein Cell       Date:  2011-12-17       Impact factor: 14.870

2.  Pol II caught speeding by single gene imaging.

Authors:  Danielle Cannon; Jonathan R Chubb
Journal:  EMBO Rep       Date:  2011-12-01       Impact factor: 8.807

Review 3.  Transcription goes digital.

Authors:  Timothée Lionnet; Robert H Singer
Journal:  EMBO Rep       Date:  2012-04-02       Impact factor: 8.807

4.  Analytical distribution and tunability of noise in a model of promoter progress.

Authors:  Jiajun Zhang; Luonan Chen; Tianshou Zhou
Journal:  Biophys J       Date:  2012-03-20       Impact factor: 4.033

5.  Gene promoters dictate histone occupancy within genes.

Authors:  Roberto Perales; Benjamin Erickson; Lian Zhang; Hyunmin Kim; Elan Valiquett; David Bentley
Journal:  EMBO J       Date:  2013-09-06       Impact factor: 11.598

6.  Promoter-mediated transcriptional dynamics.

Authors:  Jiajun Zhang; Tianshou Zhou
Journal:  Biophys J       Date:  2014-01-21       Impact factor: 4.033

7.  Epigenetic control of immunity.

Authors:  Meinrad Busslinger; Alexander Tarakhovsky
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-06-02       Impact factor: 10.005

8.  Granulocyte-Macrophage Colony Stimulating Factor As an Indirect Mediator of Nociceptor Activation and Pain.

Authors:  Damini Tewari; Andrew D Cook; Ming-Chin Lee; Anne D Christensen; Andrew Croxford; Burkhard Becher; Daniel Poole; Pradeep Rajasekhar; Nigel Bunnett; Julia E Smith; John A Hamilton; Stephen B McMahon
Journal:  J Neurosci       Date:  2020-02-04       Impact factor: 6.167

9.  Internal Motion of Chromatin Fibers Is Governed by Dynamics of Uncompressed Linker Strands.

Authors:  Rajib Basak; William Rosencrans; Indresh Yadav; Peiyan Yan; Nikolay V Berezhnoy; Qinming Chen; Jeroen A van Kan; Lars Nordenskiöld; Anatoly Zinchenko; Johan R C van der Maarel
Journal:  Biophys J       Date:  2020-10-27       Impact factor: 4.033

Review 10.  Types or States? Cellular Dynamics and Regenerative Potential.

Authors:  Carolyn E Adler; Alejandro Sánchez Alvarado
Journal:  Trends Cell Biol       Date:  2015-10-01       Impact factor: 20.808

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