Literature DB >> 20638265

Update on designing and building minimal cells.

Michael C Jewett1, Anthony C Forster.   

Abstract

Minimal cells comprise only the genes and biomolecular machinery necessary for basic life. Synthesizing minimal and minimized cells will improve understanding of core biology, enhance development of biotechnology strains of bacteria, and enable evolutionary optimization of natural and unnatural biopolymers. Design and construction of minimal cells is proceeding in two different directions: 'top-down' reduction of bacterial genomes in vivo and 'bottom-up' integration of DNA/RNA/protein/membrane syntheses in vitro. Major progress in the past 5 years has occurred in synthetic genomics, minimization of the Escherichia coli genome, sequencing of minimal bacterial endosymbionts, identification of essential genes, and integration of biochemical systems.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20638265      PMCID: PMC2952674          DOI: 10.1016/j.copbio.2010.06.008

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  68 in total

Review 1.  Chemical approaches to synthetic biology.

Authors:  Cristiano Chiarabelli; Pasquale Stano; Pier Luigi Luisi
Journal:  Curr Opin Biotechnol       Date:  2009-09-03       Impact factor: 9.740

Review 2.  Artificial assembly of a minimal cell.

Authors:  Giovanni Murtas
Journal:  Mol Biosyst       Date:  2009-09-28

3.  Creating bacterial strains from genomes that have been cloned and engineered in yeast.

Authors:  Carole Lartigue; Sanjay Vashee; Mikkel A Algire; Ray-Yuan Chuang; Gwynedd A Benders; Li Ma; Vladimir N Noskov; Evgeniya A Denisova; Daniel G Gibson; Nacyra Assad-Garcia; Nina Alperovich; David W Thomas; Chuck Merryman; Clyde A Hutchison; Hamilton O Smith; J Craig Venter; John I Glass
Journal:  Science       Date:  2009-08-20       Impact factor: 47.728

4.  Convergent evolution of metabolic roles in bacterial co-symbionts of insects.

Authors:  John P McCutcheon; Bradon R McDonald; Nancy A Moran
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-24       Impact factor: 11.205

5.  YgdE is the 2'-O-ribose methyltransferase RlmM specific for nucleotide C2498 in bacterial 23S rRNA.

Authors:  Elzbieta Purta; Michelle O'Connor; Janusz M Bujnicki; Stephen Douthwaite
Journal:  Mol Microbiol       Date:  2009-04-28       Impact factor: 3.501

6.  Programming cells by multiplex genome engineering and accelerated evolution.

Authors:  Harris H Wang; Farren J Isaacs; Peter A Carr; Zachary Z Sun; George Xu; Craig R Forest; George M Church
Journal:  Nature       Date:  2009-07-26       Impact factor: 49.962

7.  Emergent bistability by a growth-modulating positive feedback circuit.

Authors:  Cheemeng Tan; Philippe Marguet; Lingchong You
Journal:  Nat Chem Biol       Date:  2009-10-04       Impact factor: 15.040

8.  Origin of an alternative genetic code in the extremely small and GC-rich genome of a bacterial symbiont.

Authors:  John P McCutcheon; Bradon R McDonald; Nancy A Moran
Journal:  PLoS Genet       Date:  2009-07-17       Impact factor: 5.917

9.  The universal YrdC/Sua5 family is required for the formation of threonylcarbamoyladenosine in tRNA.

Authors:  Basma El Yacoubi; Benjamin Lyons; Yulien Cruz; Robert Reddy; Brian Nordin; Fabio Agnelli; James R Williamson; Paul Schimmel; Manal A Swairjo; Valérie de Crécy-Lagard
Journal:  Nucleic Acids Res       Date:  2009-03-13       Impact factor: 16.971

10.  Formation of the first peptide bond: the structure of EF-P bound to the 70S ribosome.

Authors:  Gregor Blaha; Robin E Stanley; Thomas A Steitz
Journal:  Science       Date:  2009-08-21       Impact factor: 47.728

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  45 in total

1.  Downward causation by information control in micro-organisms.

Authors:  Luc Jaeger; Erin R Calkins
Journal:  Interface Focus       Date:  2011-09-29       Impact factor: 3.906

Review 2.  Cell-free synthetic biology: thinking outside the cell.

Authors:  C Eric Hodgman; Michael C Jewett
Journal:  Metab Eng       Date:  2011-09-18       Impact factor: 9.783

3.  Multiplexed in vivo His-tagging of enzyme pathways for in vitro single-pot multienzyme catalysis.

Authors:  Harris H Wang; Po-Yi Huang; George Xu; Wilhelm Haas; Adam Marblestone; Jun Li; Steven P Gygi; Anthony C Forster; Michael C Jewett; George M Church
Journal:  ACS Synth Biol       Date:  2012-02-17       Impact factor: 5.110

Review 4.  Toward the assembly of a minimal divisome.

Authors:  Zohreh Nourian; Andrew Scott; Christophe Danelon
Journal:  Syst Synth Biol       Date:  2014-04-27

Review 5.  Divided we stand: splitting synthetic cells for their proliferation.

Authors:  Yaron Caspi; Cees Dekker
Journal:  Syst Synth Biol       Date:  2014-05-27

Review 6.  Systems biology perspectives on minimal and simpler cells.

Authors:  Joana C Xavier; Kiran Raosaheb Patil; Isabel Rocha
Journal:  Microbiol Mol Biol Rev       Date:  2014-09       Impact factor: 11.056

7.  Programming biological operating systems: genome design, assembly and activation.

Authors:  Daniel G Gibson
Journal:  Nat Methods       Date:  2014-05       Impact factor: 28.547

Review 8.  Droplet-based microfluidics for artificial cell generation: a brief review.

Authors:  Chiara Martino; Andrew J deMello
Journal:  Interface Focus       Date:  2016-08-06       Impact factor: 3.906

Review 9.  Repurposing ribosomes for synthetic biology.

Authors:  Yi Liu; Do Soon Kim; Michael C Jewett
Journal:  Curr Opin Chem Biol       Date:  2017-09-01       Impact factor: 8.822

Review 10.  Biology by design: from top to bottom and back.

Authors:  Brian R Fritz; Laura E Timmerman; Nichole M Daringer; Joshua N Leonard; Michael C Jewett
Journal:  J Biomed Biotechnol       Date:  2010-11-02
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