Literature DB >> 20634315

Nonsense-mediated mRNA decay maintains translational fidelity by limiting magnesium uptake.

Marcus J O Johansson1, Allan Jacobson.   

Abstract

Inactivation of the yeast nonsense-mediated mRNA decay (NMD) pathway stabilizes nonsense mRNAs and promotes readthrough of premature translation termination codons. Although the latter phenotype is thought to reflect a direct role of NMD factors in translation termination, its mechanism is unknown. Here we show that the reduced termination efficiency of NMD-deficient cells is attributable to increased expression of the magnesium transporter Alr1p and the resulting effects of elevated Mg(2+) levels on termination fidelity. Alr1p levels increase because an upstream ORF in ALR1 mRNA targets the transcript for NMD. Our results demonstrate that NMD, at least in yeast, controls Mg(2+) homeostasis and, consequently, translational fidelity.

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Year:  2010        PMID: 20634315      PMCID: PMC2904939          DOI: 10.1101/gad.1930710

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  27 in total

1.  Nonsense-mediated mRNA decay: Target genes and functional diversification of effectors.

Authors:  Jan Rehwinkel; Jeroen Raes; Elisa Izaurralde
Journal:  Trends Biochem Sci       Date:  2006-09-28       Impact factor: 13.807

2.  Upf1p control of nonsense mRNA translation is regulated by Nmd2p and Upf3p.

Authors:  A B Maderazo; F He; D A Mangus; A Jacobson
Journal:  Mol Cell Biol       Date:  2000-07       Impact factor: 4.272

3.  Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae.

Authors:  M S Longtine; A McKenzie; D J Demarini; N G Shah; A Wach; A Brachat; P Philippsen; J R Pringle
Journal:  Yeast       Date:  1998-07       Impact factor: 3.239

4.  Genetic and biochemical characterization of mutations in the ATPase and helicase regions of the Upf1 protein.

Authors:  Y Weng; K Czaplinski; S W Peltz
Journal:  Mol Cell Biol       Date:  1996-10       Impact factor: 4.272

5.  Chapter 6. Qualitative and quantitative assessment of the activity of the yeast nonsense-mediated mRNA decay pathway.

Authors:  Feng He; Nadia Amrani; Marcus J O Johansson; Allan Jacobson
Journal:  Methods Enzymol       Date:  2008       Impact factor: 1.600

6.  Agents that cause a high frequency of genetic change from [psi+] to [psi-] in Saccharomyces cerevisiae.

Authors:  M F Tuite; C R Mundy; B S Cox
Journal:  Genetics       Date:  1981-08       Impact factor: 4.562

7.  Association of yeast Upf1p with direct substrates of the NMD pathway.

Authors:  Marcus J O Johansson; Feng He; Phyllis Spatrick; Chunfang Li; Allan Jacobson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-17       Impact factor: 11.205

8.  Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways.

Authors:  Pavel V Ivanov; Niels H Gehring; Joachim B Kunz; Matthias W Hentze; Andreas E Kulozik
Journal:  EMBO J       Date:  2008-02-07       Impact factor: 11.598

9.  Structure of the 70S ribosome complexed with mRNA and tRNA.

Authors:  Maria Selmer; Christine M Dunham; Frank V Murphy; Albert Weixlbaumer; Sabine Petry; Ann C Kelley; John R Weir; V Ramakrishnan
Journal:  Science       Date:  2006-09-07       Impact factor: 47.728

10.  Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation.

Authors:  Marija Cvijović; Daniel Dalevi; Elizabeth Bilsland; Graham J L Kemp; Per Sunnerhagen
Journal:  BMC Bioinformatics       Date:  2007-08-08       Impact factor: 3.169

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  33 in total

1.  Genetic code translation displays a linear trade-off between efficiency and accuracy of tRNA selection.

Authors:  Magnus Johansson; Jingji Zhang; Måns Ehrenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-21       Impact factor: 11.205

Review 2.  Nonsense-mediated mRNA decay: The challenge of telling right from wrong in a complex transcriptome.

Authors:  Aparna Kishor; Sarah E Fritz; J Robert Hogg
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-05-26       Impact factor: 9.957

3.  Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs.

Authors:  Guo-Liang Chew; Andrea Pauli; John L Rinn; Aviv Regev; Alexander F Schier; Eivind Valen
Journal:  Development       Date:  2013-05-22       Impact factor: 6.868

4.  Nonsense suppression by near-cognate tRNAs employs alternative base pairing at codon positions 1 and 3.

Authors:  Bijoyita Roy; John D Leszyk; David A Mangus; Allan Jacobson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-02       Impact factor: 11.205

5.  Translational competence of ribosomes released from a premature termination codon is modulated by NMD factors.

Authors:  Shubhendu Ghosh; Robin Ganesan; Nadia Amrani; Allan Jacobson
Journal:  RNA       Date:  2010-07-30       Impact factor: 4.942

Review 6.  Nonsense-Mediated mRNA Decay: Degradation of Defective Transcripts Is Only Part of the Story.

Authors:  Feng He; Allan Jacobson
Journal:  Annu Rev Genet       Date:  2015-10-02       Impact factor: 16.830

Review 7.  The intimate relationships of mRNA decay and translation.

Authors:  Bijoyita Roy; Allan Jacobson
Journal:  Trends Genet       Date:  2013-09-30       Impact factor: 11.639

8.  Poly(A)-Binding Protein Regulates the Efficiency of Translation Termination.

Authors:  Chan Wu; Bijoyita Roy; Feng He; Kevin Yan; Allan Jacobson
Journal:  Cell Rep       Date:  2020-11-17       Impact factor: 9.423

9.  Functional characterization of Upf1 targets in Schizosaccharomyces pombe.

Authors:  Ana M Matia-González; Ayesha Hasan; Gøril H Moe; Juan Mata; Miguel A Rodríguez-Gabriel
Journal:  RNA Biol       Date:  2013-04-16       Impact factor: 4.652

Review 10.  NMD: a multifaceted response to premature translational termination.

Authors:  Stephanie Kervestin; Allan Jacobson
Journal:  Nat Rev Mol Cell Biol       Date:  2012-10-17       Impact factor: 94.444

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