Literature DB >> 20631113

Recognition of potentially novel human disease-associated pathogens by implementation of systematic 16S rRNA gene sequencing in the diagnostic laboratory.

Peter M Keller1, Silvana K Rampini, Andrea C Büchler, Gerhard Eich, Roger M Wanner, Roberto F Speck, Erik C Böttger, Guido V Bloemberg.   

Abstract

Clinical isolates that are difficult to identify by conventional means form a valuable source of novel human pathogens. We report on a 5-year study based on systematic 16S rRNA gene sequence analysis. We found 60 previously unknown 16S rRNA sequences corresponding to potentially novel bacterial taxa. For 30 of 60 isolates, clinical relevance was evaluated; 18 of the 30 isolates analyzed were considered to be associated with human disease.

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Year:  2010        PMID: 20631113      PMCID: PMC2937732          DOI: 10.1128/JCM.01098-10

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  27 in total

Review 1.  16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls.

Authors:  J Michael Janda; Sharon L Abbott
Journal:  J Clin Microbiol       Date:  2007-07-11       Impact factor: 5.948

2.  Evaluation of the colorimetric VITEK 2 card for identification of gram-negative nonfermentative rods: comparison to 16S rRNA gene sequencing.

Authors:  A Zbinden; E C Böttger; P P Bosshard; R Zbinden
Journal:  J Clin Microbiol       Date:  2007-05-16       Impact factor: 5.948

3.  Lack of evidence for "Acinetobacter septicus" as a species different from Acinetobacter ursingii?

Authors:  Alexandr Nemec; Martin Musílek; Mario Vaneechoute; Enevold Falsen; Lenie Dijkshoorn
Journal:  J Clin Microbiol       Date:  2008-08       Impact factor: 5.948

4.  The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.

Authors:  Pablo Yarza; Michael Richter; Jörg Peplies; Jean Euzeby; Rudolf Amann; Karl-Heinz Schleifer; Wolfgang Ludwig; Frank Oliver Glöckner; Ramon Rosselló-Móra
Journal:  Syst Appl Microbiol       Date:  2008-08-09       Impact factor: 4.022

5.  Corynebacterium timonense sp. nov. and Corynebacterium massiliense sp. nov., isolated from human blood and human articular hip fluid.

Authors:  Vicky Merhej; Enevold Falsen; Didier Raoult; Véronique Roux
Journal:  Int J Syst Evol Microbiol       Date:  2009-06-30       Impact factor: 2.747

6.  Corynebacterium pyruviciproducens sp. nov., a pyruvic acid producer.

Authors:  Jia Tong; Chengxu Liu; Paula H Summanen; Huaxi Xu; Sydney M Finegold
Journal:  Int J Syst Evol Microbiol       Date:  2009-08-07       Impact factor: 2.747

7.  Corynebacterium freiburgense sp. nov., isolated from a wound obtained from a dog bite.

Authors:  Guido Funke; Reinhard Frodl; Kathryn A Bernard; Ralf Englert
Journal:  Int J Syst Evol Microbiol       Date:  2009-07-15       Impact factor: 2.747

Review 8.  Then and now: use of 16S rDNA gene sequencing for bacterial identification and discovery of novel bacteria in clinical microbiology laboratories.

Authors:  P C Y Woo; S K P Lau; J L L Teng; H Tse; K-Y Yuen
Journal:  Clin Microbiol Infect       Date:  2008-10       Impact factor: 8.067

9.  Isolation of Corynebacterium ureicelerivorans from normally sterile sites in humans.

Authors:  M I Fernández-Natal; J A Sáez-Nieto; S Valdezate; R H Rodríguez-Pollán; S Lapeña; F Cachón; F Soriano
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2008-12-17       Impact factor: 3.267

10.  Identities of Arthrobacter spp. and Arthrobacter-like bacteria encountered in human clinical specimens.

Authors:  Irene S Mages; Reinhard Frodl; Kathryn A Bernard; Guido Funke
Journal:  J Clin Microbiol       Date:  2008-07-23       Impact factor: 5.948

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  4 in total

1.  A systematic approach for discovering novel, clinically relevant bacteria.

Authors:  Robert Schlaberg; Keith E Simmon; Mark A Fisher
Journal:  Emerg Infect Dis       Date:  2012-03       Impact factor: 6.883

2.  Complete Genome Sequence of Corynebacterium ureicelerivorans DSM 45051, a Lipophilic and Urea-Splitting Isolate from the Blood Culture of a Septicemia Patient.

Authors:  Anna Tippelt; Andreas Albersmeier; Karina Brinkrolf; Christian Rückert; Isabel Fernández-Natal; Francisco Soriano; Andreas Tauch
Journal:  Genome Announc       Date:  2014-11-20

3.  Metaviz: interactive statistical and visual analysis of metagenomic data.

Authors:  Justin Wagner; Florin Chelaru; Jayaram Kancherla; Joseph N Paulson; Alexander Zhang; Victor Felix; Anup Mahurkar; Niklas Elmqvist; Héctor Corrada Bravo
Journal:  Nucleic Acids Res       Date:  2018-04-06       Impact factor: 16.971

4.  leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences.

Authors:  Jean-Pierre Flandrois; Guy Perrière; Manolo Gouy
Journal:  BMC Bioinformatics       Date:  2015-08-12       Impact factor: 3.169

  4 in total

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