Literature DB >> 20622922

A Nonparametric Lower Bound for the Number of Species Shared by Multiple Communities.

H-Y Pan1, Anne Chao, Wilhelm Foissner.   

Abstract

In biological and ecological statistical inference, it is practically useful to provide a lower bound for species richness in a community. Chao (1984, 1989) derived a nonparametric lower bound for species richness in a single community. However, there have been no lower bounds proposed in the literature for the number of species shared by multiple communities. Based on sample species abundance or replicated incidence records from each of the N communities, we derive in this article a nonparametric approach to constructing a lower bound for the number of species shared by N (N ≥ 2) communities. The approach is valid for all types of species abundance distributions (for abundance data) or species detection probabilities (for replicated incidence data). Variance estimators for the proposed lower bounds are obtained by using typical asymptotic theory. Simulation results are reported to examine the performance of the lower bounds. Replicated incidence data of ciliate species collected in three areas from Namibia, southwest Africa, are used for illustration. We also briefly discuss the application of the proposed method to estimate the size of a shared population (i.e., the number of individuals in the intersection of multiple populations) based on capture-recapture data from each population.

Entities:  

Year:  2009        PMID: 20622922      PMCID: PMC2899312          DOI: 10.1198/jabes.2009.07113

Source DB:  PubMed          Journal:  J Agric Biol Environ Stat        ISSN: 1085-7117            Impact factor:   1.524


  10 in total

1.  Protist diversity: estimates of the near-imponderable.

Authors:  W Foissner
Journal:  Protist       Date:  1999-12

Review 2.  Counting the uncountable: statistical approaches to estimating microbial diversity.

Authors:  J B Hughes; J J Hellmann; T H Ricketts; B J Bohannan
Journal:  Appl Environ Microbiol       Date:  2001-10       Impact factor: 4.792

Review 3.  New approaches to analyzing microbial biodiversity data.

Authors:  Brendan J M Bohannan; Jennifer Hughes
Journal:  Curr Opin Microbiol       Date:  2003-06       Impact factor: 7.934

4.  Statistical approaches for estimating actinobacterial diversity in marine sediments.

Authors:  James E M Stach; Luis A Maldonado; Douglas G Masson; Alan C Ward; Michael Goodfellow; Alan T Bull
Journal:  Appl Environ Microbiol       Date:  2003-10       Impact factor: 4.792

5.  Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness.

Authors:  Patrick D Schloss; Jo Handelsman
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

6.  Spatial scaling of microbial eukaryote diversity.

Authors:  Jessica L Green; Andrew J Holmes; Mark Westoby; Ian Oliver; David Briscoe; Mark Dangerfield; Michael Gillings; Andrew J Beattie
Journal:  Nature       Date:  2004-12-09       Impact factor: 49.962

7.  The Petersen-Lincoln estimator and its extension to estimate the size of a shared population.

Authors:  Anne Chao; H-Y Pan; Shu-Chuan Chiang
Journal:  Biom J       Date:  2008-12       Impact factor: 2.207

8.  Comparative performance of species richness estimation methods.

Authors:  B A Walther; S Morand
Journal:  Parasitology       Date:  1998-04       Impact factor: 3.234

9.  Estimating the population size for capture-recapture data with unequal catchability.

Authors:  A Chao
Journal:  Biometrics       Date:  1987-12       Impact factor: 2.571

10.  Estimating terrestrial biodiversity through extrapolation.

Authors:  R K Colwell; J A Coddington
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1994-07-29       Impact factor: 6.237

  10 in total
  2 in total

1.  The morphological state space revisited: what do phylogenetic patterns in homoplasy tell us about the number of possible character states?

Authors:  Jennifer F Hoyal Cuthill
Journal:  Interface Focus       Date:  2015-12-06       Impact factor: 3.906

2.  How Many Genes Are Expressed in a Transcriptome? Estimation and Results for RNA-Seq.

Authors:  Luis Fernando García-Ortega; Octavio Martínez
Journal:  PLoS One       Date:  2015-06-24       Impact factor: 3.240

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.