Literature DB >> 12831905

New approaches to analyzing microbial biodiversity data.

Brendan J M Bohannan1, Jennifer Hughes.   

Abstract

Modern molecular techniques have revealed an extraordinary diversity of microorganisms, most of which are as yet uncharacterized. This poses a major challenge to microbial ecologists: how can one compare the microbial diversity of different environments when the vast majority of microbial taxa are usually unknown? Three statistical approaches developed by ecologists and evolutionary biologists--parametric estimation, nonparametric estimation and community phylogenetics--are proving to be promising tools to meet this challenge. The combination of these tools with molecular biology techniques allow the rigorous estimation and comparison of microbial diversity in different environments.

Mesh:

Year:  2003        PMID: 12831905     DOI: 10.1016/s1369-5274(03)00055-9

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  32 in total

Review 1.  An ecological perspective on bacterial biodiversity.

Authors:  M Claire Horner-Devine; Karen M Carney; Brendan J M Bohannan
Journal:  Proc Biol Sci       Date:  2004-01-22       Impact factor: 5.349

Review 2.  From structure to function: the ecology of host-associated microbial communities.

Authors:  Courtney J Robinson; Brendan J M Bohannan; Vincent B Young
Journal:  Microbiol Mol Biol Rev       Date:  2010-09       Impact factor: 11.056

3.  A Nonparametric Lower Bound for the Number of Species Shared by Multiple Communities.

Authors:  H-Y Pan; Anne Chao; Wilhelm Foissner
Journal:  J Agric Biol Environ Stat       Date:  2009-12-17       Impact factor: 1.524

4.  Changes in epiphytic bacterial communities of intertidal seaweeds modulated by host, temporality, and copper enrichment.

Authors:  Martha B Hengst; Santiago Andrade; Bernardo González; Juan A Correa
Journal:  Microb Ecol       Date:  2010-03-24       Impact factor: 4.552

5.  Intra- and interspecific comparisons of bacterial diversity and community structure support coevolution of gut microbiota and termite host.

Authors:  Yuichi Hongoh; Pinsurang Deevong; Tetsushi Inoue; Shigeharu Moriya; Savitr Trakulnaleamsai; Moriya Ohkuma; Charunee Vongkaluang; Napavarn Noparatnaraporn; Toshiaki Kudo
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

6.  Composition and structure of microbial communities from stromatolites of Hamelin Pool in Shark Bay, Western Australia.

Authors:  Dominic Papineau; Jeffrey J Walker; Stephen J Mojzsis; Norman R Pace
Journal:  Appl Environ Microbiol       Date:  2005-08       Impact factor: 4.792

7.  Diversity of Planctomycetes in soil in relation to soil history and environmental heterogeneity.

Authors:  Daniel H Buckley; Varisa Huangyutitham; Tyrrell A Nelson; Angelika Rumberger; Janice E Thies
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

8.  Effects of abiotic factors on the phylogenetic diversity of bacterial communities in acidic thermal springs.

Authors:  Jayanti Mathur; Richard W Bizzoco; Dean G Ellis; David A Lipson; Alexander W Poole; Richard Levine; Scott T Kelley
Journal:  Appl Environ Microbiol       Date:  2007-01-12       Impact factor: 4.792

9.  Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices.

Authors:  Martin Hartmann; Franco Widmer
Journal:  Appl Environ Microbiol       Date:  2006-10-13       Impact factor: 4.792

10.  Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahía del Tóbari, Mexico.

Authors:  J Michael Beman; Christopher A Francis
Journal:  Appl Environ Microbiol       Date:  2006-09-29       Impact factor: 4.792

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