Literature DB >> 20620149

The pathway of product release from the R state of aspartate transcarbamoylase.

Kimberly R Mendes1, Evan R Kantrowitz.   

Abstract

The pathway of product release from the R state of aspartate transcarbamoylase (ATCase; EC 2.1.3.2, aspartate carbamoyltransferase) has been determined here by solving the crystal structure of Escherichia coli ATCase locked in the R quaternary structure by specific introduction of disulfide bonds. ATCase displays ordered substrate binding and product release, remaining in the R state until substrates are exhausted. The structure reported here represents ATCase in the R state bound to the final product molecule, phosphate. This structure has been difficult to obtain previously because the enzyme relaxes back to the T state after the substrates are exhausted. Hence, cocrystallizing the wild-type enzyme with phosphate results in a T-state structure. In this structure of the enzyme trapped in the R state with specific disulfide bonds, we observe two phosphate molecules per active site. The position of the first phosphate corresponds to the position of the phosphate of carbamoyl phosphate (CP) and the position of the phosphonate of N-phosphonacetyl-l-aspartate. However, the second, more weakly bound phosphate is bound in a positively charged pocket that is more accessible to the surface than the other phosphate. The second phosphate appears to be on the path that phosphate would have to take to exit the active site. Our results suggest that phosphate dissociation and CP binding can occur simultaneously and that the dissociation of phosphate may actually promote the binding of CP for more efficient catalysis. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20620149      PMCID: PMC2955890          DOI: 10.1016/j.jmb.2010.07.003

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  37 in total

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Authors:  M M Bradford
Journal:  Anal Biochem       Date:  1976-05-07       Impact factor: 3.365

2.  Allosteric regulation of aspartate transcarbamoylase. Analysis of the structural and functional behavior in terms of a two-state model.

Authors:  G J Howlett; M N Blackburn; J G Compton; H K Schachman
Journal:  Biochemistry       Date:  1977-11-15       Impact factor: 3.162

3.  Complex of N-phosphonacetyl-L-aspartate with aspartate carbamoyltransferase. X-ray refinement, analysis of conformational changes and catalytic and allosteric mechanisms.

Authors:  H M Ke; W N Lipscomb; Y J Cho; R B Honzatko
Journal:  J Mol Biol       Date:  1988-12-05       Impact factor: 5.469

4.  An improved colorimetric assay for aspartate and ornithine transcarbamylases.

Authors:  S C Pastra-Landis; J Foote; E R Kantrowitz
Journal:  Anal Biochem       Date:  1981-12       Impact factor: 3.365

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Authors:  Y Hsuanyu; F C Wedler
Journal:  Arch Biochem Biophys       Date:  1987-12       Impact factor: 4.013

Review 6.  Escherichia coli aspartate transcarbamylase: the relation between structure and function.

Authors:  E R Kantrowitz; W N Lipscomb
Journal:  Science       Date:  1988-08-05       Impact factor: 47.728

7.  Superproduction and rapid purification of Escherichia coli aspartate transcarbamylase and its catalytic subunit under extreme derepression of the pyrimidine pathway.

Authors:  S F Nowlan; E R Kantrowitz
Journal:  J Biol Chem       Date:  1985-11-25       Impact factor: 5.157

8.  A possible model for the concerted allosteric transition in Escherichia coli aspartate transcarbamylase as deduced from site-directed mutagenesis studies.

Authors:  M M Ladjimi; E R Kantrowitz
Journal:  Biochemistry       Date:  1988-01-12       Impact factor: 3.162

9.  In the presence of CTP, UTP becomes an allosteric inhibitor of aspartate transcarbamoylase.

Authors:  J R Wild; S J Loughrey-Chen; T S Corder
Journal:  Proc Natl Acad Sci U S A       Date:  1989-01       Impact factor: 11.205

10.  Analysis of two purified mutants of Escherichia coli aspartate transcarbamylase with single amino acid substitutions.

Authors:  R S Silver; J P Daigneault; P D Teague; E R Kantrowitz
Journal:  J Mol Biol       Date:  1983-08-25       Impact factor: 5.469

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3.  A cooperative Escherichia coli aspartate transcarbamoylase without regulatory subunits .

Authors:  Kimberly R Mendes; Evan R Kantrowitz
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Journal:  Arch Biochem Biophys       Date:  2011-12-16       Impact factor: 4.013

5.  Structure of the catalytic chain of Methanococcus jannaschii aspartate transcarbamoylase in a hexagonal crystal form: insights into the path of carbamoyl phosphate to the active site of the enzyme.

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