Literature DB >> 20610404

A strategy for direct mapping and identification of mutations by whole-genome sequencing.

Steven Zuryn1, Stéphanie Le Gras, Karine Jamet, Sophie Jarriault.   

Abstract

Mutant screens have proven powerful for genetic dissection of a myriad of biological processes, but subsequent identification and isolation of the causative mutations are usually complex and time consuming. We have made the process easier by establishing a novel strategy that employs whole-genome sequencing to simultaneously map and identify mutations without the need for any prior genetic mapping.

Mesh:

Year:  2010        PMID: 20610404      PMCID: PMC2940307          DOI: 10.1534/genetics.110.119230

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  20 in total

1.  Rapid gene mapping in Caenorhabditis elegans using a high density polymorphism map.

Authors:  S R Wicks; R T Yeh; W R Gish; R H Waterston; R H Plasterk
Journal:  Nat Genet       Date:  2001-06       Impact factor: 38.330

2.  Whole-genome sequencing and variant discovery in C. elegans.

Authors:  LaDeana W Hillier; Gabor T Marth; Aaron R Quinlan; David Dooling; Ginger Fewell; Derek Barnett; Paul Fox; Jarret I Glasscock; Matthew Hickenbotham; Weichun Huang; Vincent J Magrini; Ryan J Richt; Sacha N Sander; Donald A Stewart; Michael Stromberg; Eric F Tsung; Todd Wylie; Tim Schedl; Richard K Wilson; Elaine R Mardis
Journal:  Nat Methods       Date:  2008-01-20       Impact factor: 28.547

3.  Rapid whole-genome mutational profiling using next-generation sequencing technologies.

Authors:  Douglas R Smith; Aaron R Quinlan; Heather E Peckham; Kathryn Makowsky; Wei Tao; Betty Woolf; Lei Shen; William F Donahue; Nadeem Tusneem; Michael P Stromberg; Donald A Stewart; Lu Zhang; Swati S Ranade; Jason B Warner; Clarence C Lee; Brittney E Coleman; Zheng Zhang; Stephen F McLaughlin; Joel A Malek; Jon M Sorenson; Alan P Blanchard; Jarrod Chapman; David Hillman; Feng Chen; Daniel S Rokhsar; Kevin J McKernan; Thomas W Jeffries; Gabor T Marth; Paul M Richardson
Journal:  Genome Res       Date:  2008-09-04       Impact factor: 9.043

4.  Analysis of multiple ethyl methanesulfonate-mutagenized Caenorhabditis elegans strains by whole-genome sequencing.

Authors:  Sumeet Sarin; Vincent Bertrand; Henry Bigelow; Alexander Boyanov; Maria Doitsidou; Richard J Poole; Surinder Narula; Oliver Hobert
Journal:  Genetics       Date:  2010-05-03       Impact factor: 4.562

5.  Caenorhabditis elegans mutant allele identification by whole-genome sequencing.

Authors:  Sumeet Sarin; Snehit Prabhu; M Maggie O'Meara; Itsik Pe'er; Oliver Hobert
Journal:  Nat Methods       Date:  2008-08-01       Impact factor: 28.547

Review 6.  The biochemistry of mutagenesis.

Authors:  J W Drake; R H Baltz
Journal:  Annu Rev Biochem       Date:  1976       Impact factor: 23.643

7.  A Caenorhabditis elegans model for epithelial-neuronal transdifferentiation.

Authors:  Sophie Jarriault; Yannick Schwab; Iva Greenwald
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-28       Impact factor: 11.205

8.  Rapid single nucleotide polymorphism mapping in C. elegans.

Authors:  M Wayne Davis; Marc Hammarlund; Tracey Harrach; Patrick Hullett; Shawn Olsen; Erik M Jorgensen
Journal:  BMC Genomics       Date:  2005-09-12       Impact factor: 3.969

9.  High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies.

Authors:  Anjana Srivatsan; Yi Han; Jianlan Peng; Ashley K Tehranchi; Richard Gibbs; Jue D Wang; Rui Chen
Journal:  PLoS Genet       Date:  2008-08-01       Impact factor: 5.917

10.  Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology.

Authors:  Richard Cronn; Aaron Liston; Matthew Parks; David S Gernandt; Rongkun Shen; Todd Mockler
Journal:  Nucleic Acids Res       Date:  2008-08-27       Impact factor: 16.971

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  84 in total

1.  Efficient mapping and cloning of mutations in zebrafish by low-coverage whole-genome sequencing.

Authors:  Margot E Bowen; Katrin Henke; Kellee R Siegfried; Matthew L Warman; Matthew P Harris
Journal:  Genetics       Date:  2011-12-14       Impact factor: 4.562

2.  Genome sequencing reveals agronomically important loci in rice using MutMap.

Authors:  Akira Abe; Shunichi Kosugi; Kentaro Yoshida; Satoshi Natsume; Hiroki Takagi; Hiroyuki Kanzaki; Hideo Matsumura; Kakoto Yoshida; Chikako Mitsuoka; Muluneh Tamiru; Hideki Innan; Liliana Cano; Sophien Kamoun; Ryohei Terauchi
Journal:  Nat Biotechnol       Date:  2012-01-22       Impact factor: 54.908

3.  SNP-Ratio Mapping (SRM): identifying lethal alleles and mutations in complex genetic backgrounds by next-generation sequencing.

Authors:  Heike Lindner; Michael T Raissig; Christian Sailer; Hiroko Shimosato-Asano; Rémy Bruggmann; Ueli Grossniklaus
Journal:  Genetics       Date:  2012-05-29       Impact factor: 4.562

4.  Gene discovery using mutagen-induced polymorphisms and deep sequencing: application to plant disease resistance.

Authors:  Ying Zhu; Hyung-gon Mang; Qi Sun; Jun Qian; Ashley Hipps; Jian Hua
Journal:  Genetics       Date:  2012-06-19       Impact factor: 4.562

5.  Membrane fluidity is regulated by the C. elegans transmembrane protein FLD-1 and its human homologs TLCD1/2.

Authors:  Mario Ruiz; Rakesh Bodhicharla; Emma Svensk; Ranjan Devkota; Kiran Busayavalasa; Henrik Palmgren; Marcus Ståhlman; Jan Boren; Marc Pilon
Journal:  Elife       Date:  2018-12-04       Impact factor: 8.140

Review 6.  From genes to function: the C. elegans genetic toolbox.

Authors:  Thomas Boulin; Oliver Hobert
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2011-11-28       Impact factor: 5.814

Review 7.  Legume genomics: understanding biology through DNA and RNA sequencing.

Authors:  Jamie A O'Rourke; Yung-Tsi Bolon; Bruna Bucciarelli; Carroll P Vance
Journal:  Ann Bot       Date:  2014-04-25       Impact factor: 4.357

8.  Genetic mapping of the nulliplex-branch gene (gb_nb1) in cotton using next-generation sequencing.

Authors:  Wei Chen; Jinbo Yao; Li Chu; Zhengwen Yuan; Yan Li; Yongshan Zhang
Journal:  Theor Appl Genet       Date:  2015-01-10       Impact factor: 5.699

9.  The mitochondrial unfolded protein response activator ATFS-1 protects cells from inhibition of the mevalonate pathway.

Authors:  Manish Rauthan; Parmida Ranji; Nataly Aguilera Pradenas; Christophe Pitot; Marc Pilon
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-25       Impact factor: 11.205

10.  C. elegans mutant identification with a one-step whole-genome-sequencing and SNP mapping strategy.

Authors:  Maria Doitsidou; Richard J Poole; Sumeet Sarin; Henry Bigelow; Oliver Hobert
Journal:  PLoS One       Date:  2010-11-08       Impact factor: 3.240

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