Literature DB >> 20606268

The structures of mutant forms of Hfq from Pseudomonas aeruginosa reveal the importance of the conserved His57 for the protein hexamer organization.

Olga Moskaleva1, Bogdan Melnik, Azat Gabdulkhakov, Maria Garber, Stanislav Nikonov, Elena Stolboushkina, Alexei Nikulin.   

Abstract

The bacterial Sm-like protein Hfq forms homohexamers both in solution and in crystals. The monomers are organized as a continuous beta-sheet passing through the whole hexamer ring with a common hydrophobic core. Analysis of the Pseudomonas aeruginosa Hfq (PaeHfq) hexamer structure suggested that solvent-inaccessible intermonomer hydrogen bonds created by conserved amino-acid residues should also stabilize the quaternary structure of the protein. In this work, one such conserved residue, His57, in PaeHfq was replaced by alanine, threonine or asparagine. The crystal structures of His57Thr and His57Ala Hfq were determined and the stabilities of all of the mutant forms and of the wild-type protein were measured. The results obtained demonstrate the great importance of solvent-inaccessible conserved hydrogen bonds between the Hfq monomers in stabilization of the hexamer structure.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20606268      PMCID: PMC2898456          DOI: 10.1107/S1744309110017331

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  31 in total

1.  The Sm domain is an ancient RNA-binding motif with oligo(U) specificity.

Authors:  T Achsel; H Stark; R Lührmann
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-20       Impact factor: 11.205

2.  Stoichiometry of the Sm proteins in yeast spliceosomal snRNPs supports the heptamer ring model of the core domain.

Authors:  S Walke; E Bragado-Nilsson; B Séraphin; K Nagai
Journal:  J Mol Biol       Date:  2001-04-20       Impact factor: 5.469

3.  Host factor Hfq of Escherichia coli stimulates elongation of poly(A) tails by poly(A) polymerase I.

Authors:  E Hajnsdorf; P Régnier
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

4.  Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction.

Authors:  Thorleif Møller; Thomas Franch; Peter Højrup; Douglas R Keene; Hans Peter Bächinger; Richard G Brennan; Poul Valentin-Hansen
Journal:  Mol Cell       Date:  2002-01       Impact factor: 17.970

Review 5.  Spliceosomal UsnRNP biogenesis, structure and function.

Authors:  C L Will; R Lührmann
Journal:  Curr Opin Cell Biol       Date:  2001-06       Impact factor: 8.382

6.  XDS.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

7.  Hfq is necessary for regulation by the untranslated RNA DsrA.

Authors:  D D Sledjeski; C Whitman; A Zhang
Journal:  J Bacteriol       Date:  2001-03       Impact factor: 3.490

8.  RNA binding in an Sm core domain: X-ray structure and functional analysis of an archaeal Sm protein complex.

Authors:  I Törö; S Thore; C Mayer; J Basquin; B Séraphin; D Suck
Journal:  EMBO J       Date:  2001-05-01       Impact factor: 11.598

9.  Archaeal Sm proteins form heptameric and hexameric complexes: crystal structures of the Sm1 and Sm2 proteins from the hyperthermophile Archaeoglobus fulgidus.

Authors:  Imre Törö; Jérôme Basquin; Hiang Teo-Dreher; Dietrich Suck
Journal:  J Mol Biol       Date:  2002-06-28       Impact factor: 5.469

10.  The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs.

Authors:  Aixia Zhang; Karen M Wassarman; Joaquin Ortega; Alasdair C Steven; Gisela Storz
Journal:  Mol Cell       Date:  2002-01       Impact factor: 19.328

View more
  15 in total

1.  The second RNA chaperone, Hfq2, is also required for survival under stress and full virulence of Burkholderia cenocepacia J2315.

Authors:  Christian G Ramos; Sílvia A Sousa; André M Grilo; Joana R Feliciano; Jorge H Leitão
Journal:  J Bacteriol       Date:  2011-01-28       Impact factor: 3.490

2.  Hfqs in Bacillus anthracis: Role of protein sequence variation in the structure and function of proteins in the Hfq family.

Authors:  Catherine Vrentas; Rodolfo Ghirlando; Andrea Keefer; Zonglin Hu; Aurelie Tomczak; Apostolos G Gittis; Athulaprabha Murthi; David N Garboczi; Susan Gottesman; Stephen H Leppla
Journal:  Protein Sci       Date:  2015-08-30       Impact factor: 6.725

3.  Structure of an Escherichia coli Hfq:RNA complex at 0.97 Å resolution.

Authors:  Eike C Schulz; Orsolya Barabas
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-10-31       Impact factor: 1.056

4.  Structural basis for RNA 3'-end recognition by Hfq.

Authors:  Evelyn Sauer; Oliver Weichenrieder
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-07       Impact factor: 11.205

5.  Identification and function of the RNA chaperone Hfq in the Lyme disease spirochete Borrelia burgdorferi.

Authors:  Meghan C Lybecker; Cassandra A Abel; Andrew L Feig; D Scott Samuels
Journal:  Mol Microbiol       Date:  2010-09-27       Impact factor: 3.501

6.  Structural analysis of full-length Hfq from Escherichia coli.

Authors:  Mads Beich-Frandsen; Branislav Večerek; Björn Sjöblom; Udo Bläsi; Kristina Djinović-Carugo
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-04-20

7.  Hexamer to monomer equilibrium of E. coli Hfq in solution and its impact on RNA annealing.

Authors:  Subrata Panja; Sarah A Woodson
Journal:  J Mol Biol       Date:  2012-02-10       Impact factor: 5.469

8.  Cell-based assay to identify inhibitors of the Hfq-sRNA regulatory pathway.

Authors:  Shaima A El-Mowafi; John N Alumasa; Sarah E Ades; Kenneth C Keiler
Journal:  Antimicrob Agents Chemother       Date:  2014-07-07       Impact factor: 5.191

9.  Requirement of upstream Hfq-binding (ARN)x elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY.

Authors:  Nilshad N Salim; Martha A Faner; Jane A Philip; Andrew L Feig
Journal:  Nucleic Acids Res       Date:  2012-05-31       Impact factor: 16.971

10.  Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq.

Authors:  Mads Beich-Frandsen; Branislav Vecerek; Petr V Konarev; Björn Sjöblom; Karin Kloiber; Hermann Hämmerle; Lukas Rajkowitsch; Andrew J Miles; Georg Kontaxis; B A Wallace; Dimitri I Svergun; Robert Konrat; Udo Bläsi; Kristina Djinovic-Carugo
Journal:  Nucleic Acids Res       Date:  2011-02-17       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.