Literature DB >> 11302706

Stoichiometry of the Sm proteins in yeast spliceosomal snRNPs supports the heptamer ring model of the core domain.

S Walke1, E Bragado-Nilsson, B Séraphin, K Nagai.   

Abstract

Seven Sm proteins (B/B', D1, D2, D3, E, F and G proteins) containing a common sequence motif form a globular core domain within the U1, U2, U5 and U4/U6 spliceosomal snRNPs. Based on the crystal structure of two Sm protein dimers we have previously proposed a model of the snRNP core domain consisting of a ring of seven Sm proteins. This model postulates that there is only a single copy of each Sm protein in the core domain. In order to test this model we have determined the stoichiometry of the Sm proteins in yeast spliceosomal snRNPs. We have constructed seven different yeast strains each of which produces one of the Sm proteins tagged with a calmodulin-binding peptide (CBP). Further, each of these strains was transformed with one of seven different plasmids coding for one of the seven Sm proteins tagged with protein A. When one Sm protein is expressed as a CBP-tagged protein from the chromosome and a second protein was produced with a protein A-tag from the plasmid, the protein A-tag was detected strongly in the fraction bound to calmodulin beads, demonstrating that two different tagged Sm proteins can be assembled into functional snRNPs. In contrast when the CBP and protein A-tagged forms of the same Sm protein were co-expressed, no protein A-tag was detectable in the fraction bound to calmodulin. These results indicate that there is only a single copy of each Sm protein in the spliceosomal snRNP core domain and therefore strongly support the heptamer ring model of the spliceosomal snRNP core domain. Copyright 2001 Academic Press.

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Year:  2001        PMID: 11302706     DOI: 10.1006/jmbi.2001.4549

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  17 in total

1.  Purified U7 snRNPs lack the Sm proteins D1 and D2 but contain Lsm10, a new 14 kDa Sm D1-like protein.

Authors:  R S Pillai; C L Will; R Lührmann; D Schümperli; B Müller
Journal:  EMBO J       Date:  2001-10-01       Impact factor: 11.598

2.  Structure and assembly of an augmented Sm-like archaeal protein 14-mer.

Authors:  Cameron Mura; Martin Phillips; Anna Kozhukhovsky; David Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-31       Impact factor: 11.205

3.  Predicted structure and phyletic distribution of the RNA-binding protein Hfq.

Authors:  Xueguang Sun; Igor Zhulin; Roger M Wartell
Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971

4.  SmD1 is required for spliced leader RNA biogenesis.

Authors:  Gusti M Zeiner; Silvie Foldynová; Nancy R Sturm; Julius Lukes; David A Campbell
Journal:  Eukaryot Cell       Date:  2004-02

5.  Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs.

Authors:  Melanie D Ohi; Andrew J Link; Liping Ren; Jennifer L Jennings; W Hayes McDonald; Kathleen L Gould
Journal:  Mol Cell Biol       Date:  2002-04       Impact factor: 4.272

6.  The structures of mutant forms of Hfq from Pseudomonas aeruginosa reveal the importance of the conserved His57 for the protein hexamer organization.

Authors:  Olga Moskaleva; Bogdan Melnik; Azat Gabdulkhakov; Maria Garber; Stanislav Nikonov; Elena Stolboushkina; Alexei Nikulin
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-06-23

7.  The oligomerization and ligand-binding properties of Sm-like archaeal proteins (SmAPs).

Authors:  Cameron Mura; Anna Kozhukhovsky; Mari Gingery; Martin Phillips; David Eisenberg
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

8.  Sm-like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coli.

Authors:  Claude Sauter; Jérôme Basquin; Dietrich Suck
Journal:  Nucleic Acids Res       Date:  2003-07-15       Impact factor: 16.971

9.  Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein.

Authors:  Maria A Schumacher; Robert F Pearson; Thorleif Møller; Poul Valentin-Hansen; Richard G Brennan
Journal:  EMBO J       Date:  2002-07-01       Impact factor: 11.598

10.  Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information.

Authors:  Marcio L Acencio; Ney Lemke
Journal:  BMC Bioinformatics       Date:  2009-09-16       Impact factor: 3.169

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