Literature DB >> 16847461

Standards for systems biology.

Alvis Brazma1, Maria Krestyaninova, Ugis Sarkans.   

Abstract

High-throughput technologies are generating large amounts of complex data that have to be stored in databases, communicated to various data analysis tools and interpreted by scientists. Data representation and communication standards are needed to implement these steps efficiently. Here we give a classification of various standards related to systems biology and discuss various aspects of standardization in life sciences in general. Why are some standards more successful than others, what are the prerequisites for a standard to succeed and what are the possible pitfalls?

Mesh:

Year:  2006        PMID: 16847461     DOI: 10.1038/nrg1922

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  40 in total

Review 1.  Software for systems biology: from tools to integrated platforms.

Authors:  Samik Ghosh; Yukiko Matsuoka; Yoshiyuki Asai; Kun-Yi Hsin; Hiroaki Kitano
Journal:  Nat Rev Genet       Date:  2011-11-03       Impact factor: 53.242

Review 2.  Systems biology: perspectives on multiscale modeling in research on endocrine-related cancers.

Authors:  Robert Clarke; John J Tyson; Ming Tan; William T Baumann; Lu Jin; Jianhua Xuan; Yue Wang
Journal:  Endocr Relat Cancer       Date:  2019-06       Impact factor: 5.678

Review 3.  Publishing 13C metabolic flux analysis studies: a review and future perspectives.

Authors:  Scott B Crown; Maciek R Antoniewicz
Journal:  Metab Eng       Date:  2013-09-08       Impact factor: 9.783

Review 4.  Understanding diseases by mouse click: the promise and potential of computational approaches in Systems Biology.

Authors:  F Klauschen; B R Angermann; M Meier-Schellersheim
Journal:  Clin Exp Immunol       Date:  2007-07-30       Impact factor: 4.330

5.  Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE).

Authors:  Eric W Deutsch; Catherine A Ball; Jules J Berman; G Steven Bova; Alvis Brazma; Roger E Bumgarner; David Campbell; Helen C Causton; Jeffrey H Christiansen; Fabrice Daian; Delphine Dauga; Duncan R Davidson; Gregory Gimenez; Young Ah Goo; Sean Grimmond; Thorsten Henrich; Bernhard G Herrmann; Michael H Johnson; Martin Korb; Jason C Mills; Asa J Oudes; Helen E Parkinson; Laura E Pascal; Nicolas Pollet; John Quackenbush; Mirana Ramialison; Martin Ringwald; David Salgado; Susanna-Assunta Sansone; Gavin Sherlock; Christian J Stoeckert; Jason Swedlow; Ronald C Taylor; Laura Walashek; Anthony Warford; David G Wilkinson; Yi Zhou; Leonard I Zon; Alvin Y Liu; Lawrence D True
Journal:  Nat Biotechnol       Date:  2008-03       Impact factor: 54.908

6.  Genetic and molecular epidemiology.

Authors:  John P A Ioannidis
Journal:  J Epidemiol Community Health       Date:  2007-09       Impact factor: 3.710

Review 7.  Consistent design schematics for biological systems: standardization of representation in biological engineering.

Authors:  Yukiko Matsuoka; Samik Ghosh; Hiroaki Kitano
Journal:  J R Soc Interface       Date:  2009-06-03       Impact factor: 4.118

8.  [Biobanking and Biomolecular Resources Research Infrastructure (BBMRI). Implications for pathology].

Authors:  C Viertler; K Zatloukal
Journal:  Pathologe       Date:  2008-11       Impact factor: 1.011

9.  A UML profile for the OBO relation ontology.

Authors:  Gabriela D A Guardia; Ricardo Z N Vêncio; Cléver R G de Farias
Journal:  BMC Genomics       Date:  2012-10-19       Impact factor: 3.969

Review 10.  Biomarkers in autism spectrum disorder: the old and the new.

Authors:  Barbara Ruggeri; Ugis Sarkans; Gunter Schumann; Antonio M Persico
Journal:  Psychopharmacology (Berl)       Date:  2013-10-06       Impact factor: 4.530

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