Literature DB >> 20574814

Structure determination of proteins in 2H2O solution aided by a deuterium-decoupled 3D HCA(N)CO experiment.

Kenji Ogura1, Hiroyuki Kumeta, Fuyuhiko Inagaki.   

Abstract

We developed an NMR pulse sequence, 3D HCA(N)CO, to correlate the chemical shifts of protein backbone (1)Halpha and (13)Calpha to those of (13)C' in the preceding residue. By applying (2)H decoupling, the experiment was accomplished with high sensitivity comparable to that of HCA(CO)N. When combined with HCACO, HCAN and HCA(CO)N, the HCA(N)CO sequence allows the sequential assignment using backbone (13)C' and amide (15)N chemical shifts without resort to backbone amide protons. This assignment strategy was demonstrated for (13)C/(15)N-labeled GB1 dissolved in (2)H(2)O. The quality of the GB1 structure determined in (2)H(2)O was similar to that determined in H(2)O in spite of significantly smaller number of NOE correlations. Thus this strategy enables the determination of protein structures in (2)H(2)O or H(2)O at high pH values.

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Year:  2010        PMID: 20574814     DOI: 10.1007/s10858-010-9431-y

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  8 in total

1.  Automated NMR structure calculation with CYANA.

Authors:  Peter Güntert
Journal:  Methods Mol Biol       Date:  2004

2.  Three-dimensional triple-resonance NMR Spectroscopy of isotopically enriched proteins. 1990.

Authors:  Lewis E Kay; Mitsuhiko Ikura; Rolf Tschudin; Ad Bax
Journal:  J Magn Reson       Date:  2011-12       Impact factor: 2.229

3.  Sequential assignment of proline-rich regions in proteins: application to modular binding domain complexes.

Authors:  V Kanelis; L Donaldson; D R Muhandiram; D Rotin; J D Forman-Kay; L E Kay
Journal:  J Biomol NMR       Date:  2000-03       Impact factor: 2.835

4.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Improved 3D gd-HCACO and gd-(H)CACO-TOCSY experiments for isotopically enriched proteins dissolved in H2O.

Authors:  W Zhang; W H Gmeiner
Journal:  J Biomol NMR       Date:  1996-05       Impact factor: 2.835

7.  Sequential backbone assignment of isotopically enriched proteins in D2O by deuterium-decoupled HA(CA)N and HA(CACO)N.

Authors:  A C Wang; S Grzesiek; R Tschudin; P J Lodi; A Bax
Journal:  J Biomol NMR       Date:  1995-06       Impact factor: 2.835

8.  A novel approach for sequential assignment of 1H, 13C, and 15N spectra of proteins: heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin.

Authors:  M Ikura; L E Kay; A Bax
Journal:  Biochemistry       Date:  1990-05-15       Impact factor: 3.162

  8 in total
  2 in total

1.  Extension of the HA-detection based approach: (HCA)CON(CA)H and (HCA)NCO(CA)H experiments for the main-chain assignment of intrinsically disordered proteins.

Authors:  Sampo Mäntylahti; Maarit Hellman; Perttu Permi
Journal:  J Biomol NMR       Date:  2011-01-25       Impact factor: 2.835

2.  The Disordered EZH2 Loop: Atomic Level Characterization by 1HN- and 1Hα-Detected NMR Approaches, Interaction with the Long Noncoding HOTAIR RNA.

Authors:  Csenge Lilla Szabó; Beáta Szabó; Fanni Sebák; Wolfgang Bermel; Agnes Tantos; Andrea Bodor
Journal:  Int J Mol Sci       Date:  2022-05-30       Impact factor: 6.208

  2 in total

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