Literature DB >> 20566348

Non-coding RNA in apicomplexan parasites.

Mariana Matrajt1.   

Abstract

In recent years it has became evident that the transcriptome of most species has little protein-coding capacity and that the abundance of non-coding RNA was previously overlooked. Non-coding RNAs were initially thought to be transcriptional noise, however, a growing number of studies is showing that many of these RNAs have important regulatory functions. Here, we review the progress done in apicomplexan parasites in this rapidly growing field. Copyright 2010 Elsevier B.V. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20566348      PMCID: PMC2926168          DOI: 10.1016/j.molbiopara.2010.06.002

Source DB:  PubMed          Journal:  Mol Biochem Parasitol        ISSN: 0166-6851            Impact factor:   1.759


  68 in total

1.  Chromatin associated sense and antisense noncoding RNAs are transcribed from the var gene family of virulence genes of the malaria parasite Plasmodium falciparum.

Authors:  Christian Epp; Felomena Li; Cali A Howitt; Thanat Chookajorn; Kirk W Deitsch
Journal:  RNA       Date:  2008-11-26       Impact factor: 4.942

Review 2.  Long non-coding RNAs: insights into functions.

Authors:  Tim R Mercer; Marcel E Dinger; John S Mattick
Journal:  Nat Rev Genet       Date:  2009-03       Impact factor: 53.242

Review 3.  A three-dimensional view of the molecular machinery of RNA interference.

Authors:  Martin Jinek; Jennifer A Doudna
Journal:  Nature       Date:  2009-01-22       Impact factor: 49.962

Review 4.  Noncoding RNA in development.

Authors:  Paulo P Amaral; John S Mattick
Journal:  Mamm Genome       Date:  2008-10-07       Impact factor: 2.957

5.  Multilevel regulation of gene expression by microRNAs.

Authors:  Eugene V Makeyev; Tom Maniatis
Journal:  Science       Date:  2008-03-28       Impact factor: 47.728

6.  The eukaryotic genome as an RNA machine.

Authors:  Paulo P Amaral; Marcel E Dinger; Tim R Mercer; John S Mattick
Journal:  Science       Date:  2008-03-28       Impact factor: 47.728

7.  Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs.

Authors:  Kouji Hirota; Tomoichiro Miyoshi; Kazuto Kugou; Charles S Hoffman; Takehiko Shibata; Kunihiro Ohta
Journal:  Nature       Date:  2008-09-28       Impact factor: 49.962

Review 8.  Differentiating protein-coding and noncoding RNA: challenges and ambiguities.

Authors:  Marcel E Dinger; Ken C Pang; Tim R Mercer; John S Mattick
Journal:  PLoS Comput Biol       Date:  2008-11-28       Impact factor: 4.475

9.  The transcription of bradyzoite genes in Toxoplasma gondii is controlled by autonomous promoter elements.

Authors:  Michael S Behnke; Josh B Radke; Aaron T Smith; William J Sullivan; Michael W White
Journal:  Mol Microbiol       Date:  2008-04-21       Impact factor: 3.501

10.  No miRNA were found in Plasmodium and the ones identified in erythrocytes could not be correlated with infection.

Authors:  Xiangyang Xue; Qingfeng Zhang; Yufu Huang; Le Feng; Weiqing Pan
Journal:  Malar J       Date:  2008-03-10       Impact factor: 2.979

View more
  7 in total

Review 1.  Mechanisms of Toxoplasma gondii persistence and latency.

Authors:  William J Sullivan; Victoria Jeffers
Journal:  FEMS Microbiol Rev       Date:  2011-10-04       Impact factor: 16.408

2.  Disruption of the expression of a non-coding RNA significantly impairs cellular differentiation in Toxoplasma gondii.

Authors:  Veerupaxagouda Patil; Pamela J Lescault; Dario Lirussi; Ann B Thompson; Mariana Matrajt
Journal:  Int J Mol Sci       Date:  2012-12-28       Impact factor: 5.923

3.  Genomic data reveal Toxoplasma gondii differentiation mutants are also impaired with respect to switching into a novel extracellular tachyzoite state.

Authors:  Pamela J Lescault; Ann B Thompson; Veerupaxagouda Patil; Dario Lirussi; Amanda Burton; Juan Margarit; Jeffrey Bond; Mariana Matrajt
Journal:  PLoS One       Date:  2010-12-30       Impact factor: 3.240

Review 4.  Noncoding RNAs in Apicomplexan Parasites: An Update.

Authors:  Yiran Li; Rodrigo P Baptista; Jessica C Kissinger
Journal:  Trends Parasitol       Date:  2020-08-20

5.  The genome of the protozoan parasite Cystoisospora suis and a reverse vaccinology approach to identify vaccine candidates.

Authors:  Nicola Palmieri; Aruna Shrestha; Bärbel Ruttkowski; Tomas Beck; Claus Vogl; Fiona Tomley; Damer P Blake; Anja Joachim
Journal:  Int J Parasitol       Date:  2017-02-02       Impact factor: 3.981

6.  Small and intermediate size structural RNAs in the unicellular parasite Cryptosporidium parvum as revealed by sRNA-seq and comparative genomics.

Authors:  Yiran Li; Rodrigo P Baptista; Xiaohan Mei; Jessica C Kissinger
Journal:  Microb Genom       Date:  2022-05

7.  The discriminant power of RNA features for pre-miRNA recognition.

Authors:  Ivani de O N Lopes; Alexander Schliep; André C P de L F de Carvalho
Journal:  BMC Bioinformatics       Date:  2014-05-02       Impact factor: 3.169

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.