Literature DB >> 20563318

Structural insights into G-quadruplexes: towards new anticancer drugs.

Danzhou Yang1, Keika Okamoto.   

Abstract

DNA G-quadruplexes are DNA secondary structures formed in specific G-rich sequences. DNA sequences that can form G-quadruplexes have been found in regions with biological significance, such as human telomeres and oncogene-promoter regions. DNA G-quadruplexes have recently emerged as a new class of novel molecular targets for anticancer drugs. Recent progress on structural studies of the biologically relevant G-quadruplexes formed in human telomeres and in the promoter regions of human oncogenes will be discussed, as well as recent advances in the design and development of G-quadruplex-interactive drugs. DNA G-quadruplexes can readily form in solution under physiological conditions and are globularly folded nucleic acid structures. The molecular structures of intramolecular G-quadruplexes appear to differ from one another and, therefore, in principle may be differentially regulated and targeted by different proteins and drugs.

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Year:  2010        PMID: 20563318      PMCID: PMC2886307          DOI: 10.4155/fmc.09.172

Source DB:  PubMed          Journal:  Future Med Chem        ISSN: 1756-8919            Impact factor:   3.808


  199 in total

1.  Inhibition of telomerase by G-quartet DNA structures.

Authors:  A M Zahler; J R Williamson; T R Cech; D M Prescott
Journal:  Nature       Date:  1991-04-25       Impact factor: 49.962

2.  Homodimeric MyoD preferentially binds tetraplex structures of regulatory sequences of muscle-specific genes.

Authors:  Shulamit Etzioni; Anat Yafe; Samer Khateb; Pnina Weisman-Shomer; Eyal Bengal; Michael Fry
Journal:  J Biol Chem       Date:  2005-05-27       Impact factor: 5.157

3.  Biophysical characterization of the human telomeric (TTAGGG)4 repeat in a potassium solution.

Authors:  Cosimo Antonacci; Jonathan B Chaires; Richard D Sheardy
Journal:  Biochemistry       Date:  2007-03-24       Impact factor: 3.162

4.  RNA quadruplex-based modulation of gene expression.

Authors:  Markus Wieland; Jörg S Hartig
Journal:  Chem Biol       Date:  2007-07

5.  DNA torsional stress propagates through chromatin fiber and participates in transcriptional regulation.

Authors:  Christophe Lavelle
Journal:  Nat Struct Mol Biol       Date:  2008-02       Impact factor: 15.369

6.  Chromatin structure of the chicken beta-globin gene region. Sensitivity to DNase I, micrococcal nuclease, and DNase II.

Authors:  W I Wood; G Felsenfeld
Journal:  J Biol Chem       Date:  1982-07-10       Impact factor: 5.157

7.  Structure of human POT1 bound to telomeric single-stranded DNA provides a model for chromosome end-protection.

Authors:  Ming Lei; Elaine R Podell; Thomas R Cech
Journal:  Nat Struct Mol Biol       Date:  2004-11-21       Impact factor: 15.369

8.  Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells.

Authors:  Anjali Verma; Vinod Kumar Yadav; Richa Basundra; Akinchan Kumar; Shantanu Chowdhury
Journal:  Nucleic Acids Res       Date:  2009-02-11       Impact factor: 16.971

9.  Genetic alterations in hormone-refractory recurrent prostate carcinomas.

Authors:  N N Nupponen; L Kakkola; P Koivisto; T Visakorpi
Journal:  Am J Pathol       Date:  1998-07       Impact factor: 4.307

10.  RPA regulates telomerase action by providing Est1p access to chromosome ends.

Authors:  Vera Schramke; Pierre Luciano; Vanessa Brevet; Sylvine Guillot; Yves Corda; Maria Pia Longhese; Eric Gilson; Vincent Géli
Journal:  Nat Genet       Date:  2003-12-21       Impact factor: 38.330

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  104 in total

1.  Resolution of quadruplex polymorphism by size-exclusion chromatography.

Authors:  M Clarke Miller; John O Trent
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2011-06

2.  Polymorphism and resolution of oncogene promoter quadruplex-forming sequences.

Authors:  M Clarke Miller; Huy T Le; William L Dean; Patrick A Holt; Jonathan B Chaires; John O Trent
Journal:  Org Biomol Chem       Date:  2011-09-21       Impact factor: 3.876

3.  Solution structure of a 2:1 quindoline-c-MYC G-quadruplex: insights into G-quadruplex-interactive small molecule drug design.

Authors:  Jixun Dai; Megan Carver; Laurence H Hurley; Danzhou Yang
Journal:  J Am Chem Soc       Date:  2011-10-14       Impact factor: 15.419

4.  Downregulation of the WT1 gene expression via TMPyP4 stabilization of promoter G-quadruplexes in leukemia cells.

Authors:  Saeedeh Ghazaey Zidanloo; Abasalt Hosseinzadeh Colagar; Hossein Ayatollahi; Jahan-Bakhsh Raoof
Journal:  Tumour Biol       Date:  2016-01-27

5.  Resolving the Ligand-Binding Specificity in c-MYC G-Quadruplex DNA: Absolute Binding Free Energy Calculations and SPR Experiment.

Authors:  Nanjie Deng; Lauren Wickstrom; Piotr Cieplak; Clement Lin; Danzhou Yang
Journal:  J Phys Chem B       Date:  2017-11-09       Impact factor: 2.991

6.  Molecular Recognition of the Hybrid-2 Human Telomeric G-Quadruplex by Epiberberine: Insights into Conversion of Telomeric G-Quadruplex Structures.

Authors:  Clement Lin; Guanhui Wu; Kaibo Wang; Buket Onel; Saburo Sakai; Yong Shao; Danzhou Yang
Journal:  Angew Chem Int Ed Engl       Date:  2018-07-18       Impact factor: 15.336

7.  Origin of Ion Specificity of Telomeric DNA G-Quadruplexes Investigated by Free-Energy Simulations.

Authors:  Till Siebenmorgen; Martin Zacharias
Journal:  Biophys J       Date:  2017-06-06       Impact factor: 4.033

8.  New insights from molecular dynamic simulation studies of the multiple binding modes of a ligand with G-quadruplex DNA.

Authors:  Jin-Qiang Hou; Shuo-Bin Chen; Jia-Heng Tan; Hai-Bin Luo; Ding Li; Lian-Quan Gu; Zhi-Shu Huang
Journal:  J Comput Aided Mol Des       Date:  2012-12-13       Impact factor: 3.686

9.  Two cationic porphyrin isomers showing different multimeric G-quadruplex recognition specificity against monomeric G-quadruplexes.

Authors:  Xiao-Xi Huang; Li-Na Zhu; Bin Wu; Yan-Fang Huo; Na-Na Duan; De-Ming Kong
Journal:  Nucleic Acids Res       Date:  2014-06-17       Impact factor: 16.971

10.  Thermodynamic characterization of human telomere quadruplex unfolding.

Authors:  R Buscaglia; R D Gray; J B Chaires
Journal:  Biopolymers       Date:  2013-12       Impact factor: 2.505

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