Literature DB >> 20563230

Electric and Electrophoretic Inversion of the DNA Charge in Multivalent Electrolytes.

Binquan Luan1, Aleksei Aksimentiev.   

Abstract

Counterion-induced inversion of the DNA charge was characterized through extensive molecular dynamics simulations. We observed reversal of the DNA motion in an external electric field upon increasing the concentration of trivalent or quadrivalent counterions. In the case of a divalent electrolyte, inversion of the DNA's electric charge was observed at high concentrations of the electrolyte but not reversal of the DNA' electrophoretic motion. We demonstrate that inversion of the DNA's electrophoretic mobility results from a complex interplay of electrostatics and hydrodynamics.

Entities:  

Year:  2010        PMID: 20563230      PMCID: PMC2885735          DOI: 10.1039/b917973a

Source DB:  PubMed          Journal:  Soft Matter        ISSN: 1744-683X            Impact factor:   3.679


  17 in total

1.  Simultaneous action of electric fields and nonelectric forces on a polyelectrolyte: Motion and deformation.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-05-13       Impact factor: 9.161

2.  Screening of a macroion by multivalent ions: correlation-induced inversion of charge.

Authors:  B I Shklovskii
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1999-11

3.  Diffusion coefficient of DNA molecules during free solution electrophoresis.

Authors:  A E Nkodo; J M Garnier; B Tinland; H Ren; C Desruisseaux; L C McCormick; G Drouin; G W Slater
Journal:  Electrophoresis       Date:  2001-08       Impact factor: 3.535

4.  Scalable molecular dynamics with NAMD.

Authors:  James C Phillips; Rosemary Braun; Wei Wang; James Gumbart; Emad Tajkhorshid; Elizabeth Villa; Christophe Chipot; Robert D Skeel; Laxmikant Kalé; Klaus Schulten
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

5.  Electrokinetic-flow-induced viscous drag on a tethered DNA inside a nanopore.

Authors:  Sandip Ghosal
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-12-26

Review 6.  DNA condensation by multivalent cations.

Authors:  V A Bloomfield
Journal:  Biopolymers       Date:  1997       Impact factor: 2.505

7.  Molecular mechanics of the interactions of spermine with DNA: DNA bending as a result of ligand binding.

Authors:  B G Feuerstein; N Pattabiraman; L J Marton
Journal:  Nucleic Acids Res       Date:  1990-03-11       Impact factor: 16.971

8.  On the competition between water, sodium ions, and spermine in binding to DNA: a molecular dynamics computer simulation study.

Authors:  Nikolay Korolev; Alexander P Lyubartsev; Aatto Laaksonen; Lars Nordenskiöld
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

Review 9.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

10.  DNA attraction in monovalent and divalent electrolytes.

Authors:  Binquan Luan; Aleksei Aksimentiev
Journal:  J Am Chem Soc       Date:  2008-11-26       Impact factor: 15.419

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  20 in total

1.  Characterizing and controlling the motion of ssDNA in a solid-state nanopore.

Authors:  Binquan Luan; Glenn Martyna; Gustavo Stolovitzky
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

2.  Control of Nanoscale Environment to Improve Stability of Immobilized Proteins on Diamond Surfaces.

Authors:  Adarsh D Radadia; Courtney J Stavis; Rogan Carr; Hongjun Zeng; William P King; John A Carlisle; Aleksei Aksimentiev; Robert J Hamers; Rashid Bashir
Journal:  Adv Funct Mater       Date:  2011-03-21       Impact factor: 18.808

3.  Ionic partition and transport in multi-ionic channels: a molecular dynamics simulation study of the OmpF bacterial porin.

Authors:  Jordi Faraudo; Carles Calero; Marcel Aguilella-Arzo
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

Review 4.  Biomolecular electrostatics and solvation: a computational perspective.

Authors:  Pengyu Ren; Jaehun Chun; Dennis G Thomas; Michael J Schnieders; Marcelo Marucho; Jiajing Zhang; Nathan A Baker
Journal:  Q Rev Biophys       Date:  2012-11       Impact factor: 5.318

Review 5.  Close encounters with DNA.

Authors:  C Maffeo; J Yoo; J Comer; D B Wells; B Luan; A Aksimentiev
Journal:  J Phys Condens Matter       Date:  2014-09-19       Impact factor: 2.333

6.  Pattern preferences of DNA nucleotide motifs by polyamines putrescine2+, spermidine3+ and spermine4.

Authors:  Sergiy Perepelytsya; Jozef Uličný; Aatto Laaksonen; Francesca Mocci
Journal:  Nucleic Acids Res       Date:  2019-07-09       Impact factor: 16.971

7.  DNA-DNA interactions in tight supercoils are described by a small effective charge density.

Authors:  Christopher Maffeo; Robert Schöpflin; Hergen Brutzer; René Stehr; Aleksei Aksimentiev; Gero Wedemann; Ralf Seidel
Journal:  Phys Rev Lett       Date:  2010-10-04       Impact factor: 9.161

8.  Dynamics of ion migration in nanopores and the effect of DNA-ion interaction.

Authors:  Shengting Cui
Journal:  J Phys Chem B       Date:  2011-08-18       Impact factor: 2.991

Review 9.  Slowing and controlling the translocation of DNA in a solid-state nanopore.

Authors:  Binquan Luan; Gustavo Stolovitzky; Glenn Martyna
Journal:  Nanoscale       Date:  2011-11-14       Impact factor: 7.790

10.  Designing a polycationic probe for simultaneous enrichment and detection of microRNAs in a nanopore.

Authors:  Kai Tian; Zhaojian He; Yong Wang; Shi-Jie Chen; Li-Qun Gu
Journal:  ACS Nano       Date:  2013-04-10       Impact factor: 15.881

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