| Literature DB >> 20559485 |
Berit B Aam1, Ellinor B Heggset, Anne Line Norberg, Morten Sørlie, Kjell M Vårum, Vincent G H Eijsink.
Abstract
Entities:
Keywords: application; chitinase; chitooligosaccharide (CHOS); chitosan; chitosanase
Mesh:
Substances:
Year: 2010 PMID: 20559485 PMCID: PMC2885077 DOI: 10.3390/md8051482
Source DB: PubMed Journal: Mar Drugs ISSN: 1660-3397 Impact factor: 5.118
Figure 1Structures of the enzymes discussed in detail in this review. Figure 1a and 1b show, respectively, ChiA and ChiB from Serratia marcescens. Figure 1c shows hevamine, a plant family 18 chitinase whose structure is thought to resemble the (unknown) structure of the catalytic domain of ChiC from Serratia marcescens. Figure 1d shows ChiG from Streptomyces coelicolor A3(2). Figure 1e shows CsnN174, a family 46 chitosanase from Streptomyces sp. N174, which, judged from sequence similarity, is highly similar to Csn88 from Streptomyces coelicolor A3(2). The side chains of the catalytic acid and of the catalytic base/nucleophile are shown.
Figure 2Schematic drawing of subsites, chitin binding domains and proposed orientation of polymeric substrates in ChiA and ChiB. Fn3, Fibronectin type 3 domain (substrate-binding); CBM5, chitin binding module. Dotted lines indicate that the polymer substrates are much longer than shown in the figure. Reducing end sugars are shown in grey. Figure and legend are from Horn et al. [56], and is reproduced with permission from Wiley-Blackwell.
Some properties of the five enzymes that are specifically discussed in this review.
| Enzyme | GH fam | Extra CBM | Mechanism | Endo/Exo | Processivity | Subsite specificity | ||
|---|---|---|---|---|---|---|---|---|
| −2 | −1 | +1 | ||||||
| | 18 | Yes (1) | Retaining | Endo/exo | Yes | A/D | A | A/D |
| | 18 | Yes (1) | Retaining | Endo/exo | Yes | A/D | A | A/D |
| | 18 | Yes (2) | Retaining | Endo | No | A/D | A | A/D |
| | 19 | No | Inverting | Endo | No | A | A/D | A |
| | 46 | No | Inverting | Endo | No | D/A | D/A | D/A |
ChiA and ChiB are compact two domain enzymes containing an Fn3 domain and a chitin-binding domain classified as CBM5 in addition to their catalytic domain, respectively (Figures 1 and 2). The crystal structures of complete ChiA and ChiB are known (Figure 1). In ChiC, the catalytic domain is connected to an Fn3-like domain and a chitin-binding domain classified as CBM12 by a proline- and glycine-rich linker, which tends to be proteolytically cleaved in vivo. It has so far not been possible to determine the crystal structure of intact ChiC.
It has been shown that ChiA and ChiB primarily act as endo-processive enzymes on chitosan [118]. This is probably also the case on chitin, although there may be more exo-activity in this case [119]. In any case, the endo-/exo- difference is of little relevance for enzymes that act processively.
Figure 3Degradation of chitosan (FA 0.65) by ChiA, ChiB and ChiC from Serratia marcescens. The pictures show chromatograms from size-exclusion chromatography. The peaks are marked by numbers which indicate the lengths (DP) of the oligomers they contain, or, in the case of peaks containing only one known compound, by the sequence of the oligomer. The annotation of the peaks is based on the use of standard samples, as well as NMR analyses. The α-values denote the degree of scission [full conversion of the chitosan to dimers only (DPn = 2) would give an α = 0.5 (α = 1/DPn)]. The lower panels represent the maximum obtainable α-values. Undegraded chitosan and fragments with a DP > 40 elute in the void volume of the column. The figure is from Horn et al. [56], and is reproduced with permission from Wiley-Blackwell. Additional product profiles at very low α for ChiA and ChiB that clearly reveal processivity have been published in Sikorski et al. [118].
Composition of dimer, trimer and tetramer fractions at different α-values during degradation of chitosan (FA = 0.65) by ChiA, B and C. Data from Horn et al. [56]. Reproduced with permission from Wiley-Blackwell.
| Enzyme | α | Dimer | Trimer | Tetramer |
|---|---|---|---|---|
| 0.15 | 81% AA | 81% DAA | 100% -AA | |
| 0.35 | 64% AA | 51% DAA | 56% -AA | |
| 0.11 | 86% AA | 71% DDA | 100% -AA | |
| 0.38 | 66% AA | 95% DAA | 75% -AA | |
| 0.20 | 100% AA | 66% DAA | 100% -AA | |
| 0.38 | 81% AA | 100% DAA | 100% -AA |
Figure 4Time course of the degradation of a chitosan with FA 0.65 by ChiB from Serratia marcescens. The graph shows the degree of scission (α) as a function of time; the biphasic kinetics is clearly visible. The slow phase continues until α reaches a value of about 0.37. Figure from Sørbotten et al. [64]. Reproduced with permission from Wiley-Blackwell.
Figure 5Size-distribution of oligomers after extended hydrolysis of various chitosans with ChiB from Serratia marcescens. The pictures show chromatograms revealing the size-distribution of oligomers obtained upon extended hydrolysis of chitosans with FA of 0.65, 0.50, 0.32 and 0.13 to α-values (corresponding DPn-values in brackets) of 0.37 (2.7), 0.34 (2.9), 0.22 (4.5) and 0.11 (9.5), respectively. Figure from Sørbotten et al. [64]. Reproduced with permission from Wiley-Blackwell.
Figure 62D profiles showing the predicted outcome of chitosan hydrolysis with ChiB from Serratia marcescens. The X-axis shows the degree of scission, α, and the Y-axis shows the FA of the starting chitosan. The predicted amount of a particular product at specific α - FA combinations is indicated by color (the amounts of oligomers are expressed as % of the total mass of the polymer in the hydrolysis reaction and color coded as defined in the inserts). These profiles allow for selection of optimal reaction and substrate parameters for efficient production of oligomers with desired lengths. For example, high yields of octamer could be obtained if chitosan with FA 0.4 is hydrolyzed to α = 0.18 (the arrow indicates the maximum level of octamers). For example, for the octamer, at maximum yield conditions, approximately 8% of the polymer is expected to be converted to octamers. Figure taken from Sikorski et al. [114], and reproduced with permission from Wiley-Blackwell.
Figure 7Size-distribution of oligomers emerging during hydrolysis of chitosan with FA 0.64 by ChiG from Streptomyces coelicolor A3(2). See legend to Figure 3 for further explanation. Figure from Heggset et al. [115]. Reproduced with permission from American Chemical Society.
Figure 8Size-distribution of oligomers after extended hydrolysis of various chitosans with ChiG from Streptomyces coelicolor A3(2). The chitosans with FA of 0.13, 0.32, 0.50, and 0.64 were degraded to maximum α-values of 0.04, 0.12, 0.23, and 0.33, respectively. Peaks are labeled as in Figure 3. Figure from Heggset et al. [115]. Reproduced with permission from American Chemical Society.