Literature DB >> 20559329

Yeast evolutionary genomics.

Bernard Dujon1.   

Abstract

Over the past few years, genome sequences have become available from an increasing range of yeast species, which has led to notable advances in our understanding of evolutionary mechanisms in eukaryotes. Yeasts offer us a unique opportunity to examine how molecular and reproductive mechanisms combine to affect genome architectures and drive evolutionary changes over a broad range of species. This Review summarizes recent progress in understanding the molecular mechanisms--such as gene duplication, mutation and acquisition of novel genetic material--that underlie yeast evolutionary genomics. I also discuss how results from yeasts can be extended to other eukaryotes.

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Year:  2010        PMID: 20559329     DOI: 10.1038/nrg2811

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  145 in total

1.  A mechanism for asymmetric segregation of age during yeast budding.

Authors:  Zhanna Shcheprova; Sandro Baldi; Stephanie Buvelot Frei; Gaston Gonnet; Yves Barral
Journal:  Nature       Date:  2008-07-27       Impact factor: 49.962

Review 2.  A prominent role for segmental duplications in modeling eukaryotic genomes.

Authors:  Romain Koszul; Gilles Fischer
Journal:  C R Biol       Date:  2008-12-02       Impact factor: 1.583

Review 3.  Role of spindle asymmetry in cellular dynamics.

Authors:  Yves Barral; Dimitris Liakopoulos
Journal:  Int Rev Cell Mol Biol       Date:  2009       Impact factor: 6.813

4.  A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand.

Authors:  Dan Li; Yang Dong; Yu Jiang; Huifeng Jiang; Jing Cai; Wen Wang
Journal:  Cell Res       Date:  2010-03-02       Impact factor: 25.617

5.  Incompatibility of nuclear and mitochondrial genomes causes hybrid sterility between two yeast species.

Authors:  Hsin-Yi Lee; Jui-Yu Chou; Liplee Cheong; Nai-Hsin Chang; Shi-Yow Yang; Jun-Yi Leu
Journal:  Cell       Date:  2008-12-12       Impact factor: 41.582

6.  Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle.

Authors:  Isheng J Tsai; Douda Bensasson; Austin Burt; Vassiliki Koufopanou
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-14       Impact factor: 11.205

7.  Molecular characterization of new natural hybrids of Saccharomyces cerevisiae and S. kudriavzevii in brewing.

Authors:  Sara S González; Eladio Barrio; Amparo Querol
Journal:  Appl Environ Microbiol       Date:  2008-02-22       Impact factor: 4.792

8.  Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens.

Authors:  Jun Xu; Charles W Saunders; Ping Hu; Raymond A Grant; Teun Boekhout; Eiko E Kuramae; James W Kronstad; Yvonne M Deangelis; Nancy L Reeder; Kevin R Johnstone; Meredith Leland; Angela M Fieno; William M Begley; Yiping Sun; Martin P Lacey; Tanuja Chaudhary; Thomas Keough; Lien Chu; Russell Sears; Bo Yuan; Thomas L Dawson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-13       Impact factor: 11.205

9.  A molecular timescale of eukaryote evolution and the rise of complex multicellular life.

Authors:  S Blair Hedges; Jaime E Blair; Maria L Venturi; Jason L Shoe
Journal:  BMC Evol Biol       Date:  2004-01-28       Impact factor: 3.260

10.  Fusion and fission of genes define a metric between fungal genomes.

Authors:  Pascal Durrens; Macha Nikolski; David Sherman
Journal:  PLoS Comput Biol       Date:  2008-10-24       Impact factor: 4.475

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  151 in total

Review 1.  Comparative genomics and the evolution of pathogenicity in human pathogenic fungi.

Authors:  Gary P Moran; David C Coleman; Derek J Sullivan
Journal:  Eukaryot Cell       Date:  2010-11-12

Review 2.  Evolutionary biology through the lens of budding yeast comparative genomics.

Authors:  Souhir Marsit; Jean-Baptiste Leducq; Éléonore Durand; Axelle Marchant; Marie Filteau; Christian R Landry
Journal:  Nat Rev Genet       Date:  2017-07-17       Impact factor: 53.242

3.  Evolutionary genomics: fission yeast compared and contrasted.

Authors:  Mary Muers
Journal:  Nat Rev Genet       Date:  2011-05-04       Impact factor: 53.242

4.  Plant-fungal ecology. Niche engineering demonstrates a latent capacity for fungal-algal mutualism.

Authors:  Erik F Y Hom; Andrew W Murray
Journal:  Science       Date:  2014-07-04       Impact factor: 47.728

5.  Independent subtilases expansions in fungi associated with animals.

Authors:  Anna Muszewska; John W Taylor; Pawel Szczesny; Marcin Grynberg
Journal:  Mol Biol Evol       Date:  2011-07-04       Impact factor: 16.240

6.  Detection and characterization of megasatellites in orthologous and nonorthologous genes of 21 fungal genomes.

Authors:  Fredj Tekaia; Bernard Dujon; Guy-Franck Richard
Journal:  Eukaryot Cell       Date:  2013-03-29

7.  Inferring ancient divergences requires genes with strong phylogenetic signals.

Authors:  Leonidas Salichos; Antonis Rokas
Journal:  Nature       Date:  2013-05-08       Impact factor: 49.962

8.  Sequential duplications of an ancient member of the DnaJ-family expanded the functional chaperone network in the eukaryotic cytosol.

Authors:  Chandan Sahi; Jacek Kominek; Thomas Ziegelhoffer; Hyun Young Yu; Maciej Baranowski; Jaroslaw Marszalek; Elizabeth A Craig
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

9.  Proteomic and functional consequences of hexokinase deficiency in glucose-repressible Kluyveromyces lactis.

Authors:  Nadia Mates; Karina Kettner; Falk Heidenreich; Theresia Pursche; Rebekka Migotti; Günther Kahlert; Eberhard Kuhlisch; Karin D Breunig; Wolfgang Schellenberger; Gunnar Dittmar; Bernard Hoflack; Thomas M Kriegel
Journal:  Mol Cell Proteomics       Date:  2014-01-16       Impact factor: 5.911

10.  Variable Spontaneous Mutation and Loss of Heterozygosity among Heterozygous Genomes in Yeast.

Authors:  Duong T Nguyen; Baojun Wu; Hongan Long; Nan Zhang; Caitlyn Patterson; Stephen Simpson; Krystalynne Morris; W Kelley Thomas; Michael Lynch; Weilong Hao
Journal:  Mol Biol Evol       Date:  2020-11-01       Impact factor: 16.240

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