Literature DB >> 20554704

The budding yeast nucleus.

Angela Taddei1, Heiko Schober, Susan M Gasser.   

Abstract

The budding yeast nucleus, like those of other eukaryotic species, is highly organized with respect to both chromosomal sequences and enzymatic activities. At the nuclear periphery interactions of nuclear pores with chromatin, mRNA, and transport factors promote efficient gene expression, whereas centromeres, telomeres, and silent chromatin are clustered and anchored away from pores. Internal nuclear organization appears to be function-dependent, reflecting localized sites for tRNA transcription, rDNA transcription, ribosome assembly, and DNA repair. Recent advances have identified new proteins involved in the positioning of chromatin and have allowed testing of the functional role of higher-order chromatin organization. The unequal distribution of silent information regulatory factors and histone modifying enzymes, which arises in part from the juxtaposition of telomeric repeats, has been shown to influence chromatin-mediated transcriptional repression. Other localization events suppress unwanted recombination. These findings highlight the contribution budding yeast genetics and cytology have made to dissecting the functional role of nuclear structure.

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Year:  2010        PMID: 20554704      PMCID: PMC2908769          DOI: 10.1101/cshperspect.a000612

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  145 in total

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Authors:  Michael J McEachern; James E Haber
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Review 3.  Chromosome territories--a functional nuclear landscape.

Authors:  Thomas Cremer; Marion Cremer; Steffen Dietzel; Stefan Müller; Irina Solovei; Stanislav Fakan
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4.  SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope.

Authors:  Ghislain G Cabal; Auguste Genovesio; Susana Rodriguez-Navarro; Christophe Zimmer; Olivier Gadal; Annick Lesne; Henri Buc; Frank Feuerbach-Fournier; Jean-Christophe Olivo-Marin; Eduard C Hurt; Ulf Nehrbass
Journal:  Nature       Date:  2006-06-08       Impact factor: 49.962

Review 5.  Structure, function, and replication of Saccharomyces cerevisiae telomeres.

Authors:  V A Zakian
Journal:  Annu Rev Genet       Date:  1996       Impact factor: 16.830

6.  An unusual form of transcriptional silencing in yeast ribosomal DNA.

Authors:  J S Smith; J D Boeke
Journal:  Genes Dev       Date:  1997-01-15       Impact factor: 11.361

7.  Transcriptional silencing of Ty1 elements in the RDN1 locus of yeast.

Authors:  M Bryk; M Banerjee; M Murphy; K E Knudsen; D J Garfinkel; M J Curcio
Journal:  Genes Dev       Date:  1997-01-15       Impact factor: 11.361

8.  SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast.

Authors:  S Strahl-Bolsinger; A Hecht; K Luo; M Grunstein
Journal:  Genes Dev       Date:  1997-01-01       Impact factor: 11.361

9.  Senescence mutants of Saccharomyces cerevisiae with a defect in telomere replication identify three additional EST genes.

Authors:  T S Lendvay; D K Morris; J Sah; B Balasubramanian; V Lundblad
Journal:  Genetics       Date:  1996-12       Impact factor: 4.562

10.  Colocalization of multiple DNA double-strand breaks at a single Rad52 repair centre.

Authors:  Michael Lisby; Uffe H Mortensen; Rodney Rothstein
Journal:  Nat Cell Biol       Date:  2003-06       Impact factor: 28.824

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  60 in total

1.  Trm112 is required for Bud23-mediated methylation of the 18S rRNA at position G1575.

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Journal:  Mol Cell Biol       Date:  2012-04-09       Impact factor: 4.272

2.  Dynamical modeling of three-dimensional genome organization in interphase budding yeast.

Authors:  Naoko Tokuda; Tomoki P Terada; Masaki Sasai
Journal:  Biophys J       Date:  2012-01-18       Impact factor: 4.033

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Journal:  Chromosoma       Date:  2011-08-10       Impact factor: 4.316

Review 4.  Something silent this way forms: the functional organization of the repressive nuclear compartment.

Authors:  Joan C Ritland Politz; David Scalzo; Mark Groudine
Journal:  Annu Rev Cell Dev Biol       Date:  2013-07-05       Impact factor: 13.827

5.  tRNA Genes Affect Chromosome Structure and Function via Local Effects.

Authors:  Omar Hamdani; Namrita Dhillon; Tsung-Han S Hsieh; Takahiro Fujita; Josefina Ocampo; Jacob G Kirkland; Josh Lawrimore; Tetsuya J Kobayashi; Brandon Friedman; Derek Fulton; Kenneth Y Wu; Răzvan V Chereji; Masaya Oki; Kerry Bloom; David J Clark; Oliver J Rando; Rohinton T Kamakaka
Journal:  Mol Cell Biol       Date:  2019-04-02       Impact factor: 4.272

6.  Effect of nuclear architecture on the efficiency of double-strand break repair.

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Journal:  Nat Cell Biol       Date:  2013-05-05       Impact factor: 28.824

Review 7.  How the nucleus copes with proteotoxic stress.

Authors:  Yoko Shibata; Richard I Morimoto
Journal:  Curr Biol       Date:  2014-05-19       Impact factor: 10.834

Review 8.  To the pore and through the pore: a story of mRNA export kinetics.

Authors:  Marlene Oeffinger; Daniel Zenklusen
Journal:  Biochim Biophys Acta       Date:  2012-02-22

Review 9.  Roles of chromatin insulator proteins in higher-order chromatin organization and transcription regulation.

Authors:  Jutta Vogelmann; Alessandro Valeri; Emmanuelle Guillou; Olivier Cuvier; Marcello Nollmann
Journal:  Nucleus       Date:  2011-09-01       Impact factor: 4.197

10.  A role for the nucleoporin Nup170p in chromatin structure and gene silencing.

Authors:  David W Van de Vosse; Yakun Wan; Diego L Lapetina; Wei-Ming Chen; Jung-Hsien Chiang; John D Aitchison; Richard W Wozniak
Journal:  Cell       Date:  2013-02-28       Impact factor: 41.582

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