Literature DB >> 20553711

SWI/SNF complexes, chromatin remodeling and skeletal myogenesis: it's time to exchange!

Sonia Albini1, Pier Lorenzo Puri.   

Abstract

Skeletal muscle differentiation relies on the coordinated activation and repression of specific subsets of genes. This reflects extensive changes in chromatin architecture, composition of chromatin-associated complexes and histone modifications at the promoter/enhancer elements of skeletal muscle genes. An early, key event in the activation of muscle-specific gene transcription is the disruption of the repressive conformation imposed by nucleosomes, which impede the access of pioneer transcription factors, such as the muscle-specific basic helix-loop-helix (bHLH) factors MyoD and Myf5, to their DNA-binding sites. This review focuses on our current understanding of the role of the SWI/SNF ATP-dependent chromatin-remodeling complex in the activation of the myogenic program, by inducing conformational changes permissive for muscle-gene expression. Recent findings suggest that specific combinations of individual SWI/SNF components can generate sub-complexes with specialized functions that are engaged at sequential stages of muscle-gene activation--e.g., initial displacement of the nucleosome followed by the loading of the complete myogenic transcriptosome that promotes gene transcription. SWI/SNF composition and function is regulated by the exchange of specific variants of structural sub-units. In turn, an exchange of histone variants and related epigenetic modifications might reflect the impact of distinct SWI/SNF complexes on the architecture and activity of target promoter/enhancer elements. Thus, the SWI/SNF complexes should be regarded not just as simple executors of the program imposed by transcription factors, but as multifaceted "readers" and "shapers" of the chromatin/DNA landscape within target muscle genes along the transition from myoblasts to myotubes.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20553711      PMCID: PMC2952693          DOI: 10.1016/j.yexcr.2010.05.023

Source DB:  PubMed          Journal:  Exp Cell Res        ISSN: 0014-4827            Impact factor:   3.905


  51 in total

Review 1.  Regulation of muscle regulatory factors by DNA-binding, interacting proteins, and post-transcriptional modifications.

Authors:  P L Puri; V Sartorelli
Journal:  J Cell Physiol       Date:  2000-11       Impact factor: 6.384

2.  Myogenic microRNA expression requires ATP-dependent chromatin remodeling enzyme function.

Authors:  Chandrashekara Mallappa; Brian T Nasipak; Letitiah Etheridge; Elliot J Androphy; Stephen N Jones; Charles G Sagerström; Yasuyuki Ohkawa; Anthony N Imbalzano
Journal:  Mol Cell Biol       Date:  2010-04-26       Impact factor: 4.272

3.  Variations in the composition of mammalian SWI/SNF chromatin remodelling complexes.

Authors:  Jessica Ryme; Patrik Asp; Stefanie Böhm; Erica Cavellán; Ann-Kristin Ostlund Farrants
Journal:  J Cell Biochem       Date:  2009-10-15       Impact factor: 4.429

Review 4.  The logic of chromatin architecture and remodelling at promoters.

Authors:  Bradley R Cairns
Journal:  Nature       Date:  2009-09-10       Impact factor: 49.962

5.  A Brg1 null mutation in the mouse reveals functional differences among mammalian SWI/SNF complexes.

Authors:  S Bultman; T Gebuhr; D Yee; C La Mantia; J Nicholson; A Gilliam; F Randazzo; D Metzger; P Chambon; G Crabtree; T Magnuson
Journal:  Mol Cell       Date:  2000-12       Impact factor: 17.970

6.  Mammalian SWI/SNF complexes promote MyoD-mediated muscle differentiation.

Authors:  I L de la Serna; K A Carlson; A N Imbalzano
Journal:  Nat Genet       Date:  2001-02       Impact factor: 38.330

7.  Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming.

Authors:  Yi Cao; Zizhen Yao; Deepayan Sarkar; Michael Lawrence; Gilson J Sanchez; Maura H Parker; Kyle L MacQuarrie; Jerry Davison; Martin T Morgan; Walter L Ruzzo; Robert C Gentleman; Stephen J Tapscott
Journal:  Dev Cell       Date:  2010-04-20       Impact factor: 12.270

Review 8.  What controls nucleosome positions?

Authors:  Eran Segal; Jonathan Widom
Journal:  Trends Genet       Date:  2009-07-10       Impact factor: 11.639

9.  Distinct factors control histone variant H3.3 localization at specific genomic regions.

Authors:  Aaron D Goldberg; Laura A Banaszynski; Kyung-Min Noh; Peter W Lewis; Simon J Elsaesser; Sonja Stadler; Scott Dewell; Martin Law; Xingyi Guo; Xuan Li; Duancheng Wen; Ariane Chapgier; Russell C DeKelver; Jeffrey C Miller; Ya-Li Lee; Elizabeth A Boydston; Michael C Holmes; Philip D Gregory; John M Greally; Shahin Rafii; Chingwen Yang; Peter J Scambler; David Garrick; Richard J Gibbons; Douglas R Higgs; Ileana M Cristea; Fyodor D Urnov; Deyou Zheng; C David Allis
Journal:  Cell       Date:  2010-03-05       Impact factor: 41.582

10.  Interaction of HP1 and Brg1/Brm with the globular domain of histone H3 is required for HP1-mediated repression.

Authors:  Marc Lavigne; Ragnhild Eskeland; Saliha Azebi; Violaine Saint-André; Suk Min Jang; Eric Batsché; Hua-Ying Fan; Robert E Kingston; Axel Imhof; Christian Muchardt
Journal:  PLoS Genet       Date:  2009-12-11       Impact factor: 5.917

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  28 in total

Review 1.  Epigenetic mechanisms in cardiac development and disease.

Authors:  Marcus Vallaster; Caroline Dacwag Vallaster; Sean M Wu
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2012-01       Impact factor: 3.848

2.  Lysine methyltransferase G9a methylates the transcription factor MyoD and regulates skeletal muscle differentiation.

Authors:  Belinda Mei Tze Ling; Narendra Bharathy; Teng-Kai Chung; Wai Kay Kok; SiDe Li; Yong Hua Tan; Vinay Kumar Rao; Suma Gopinadhan; Vittorio Sartorelli; Martin J Walsh; Reshma Taneja
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-03       Impact factor: 11.205

3.  Update from the 2011 International Schwannomatosis Workshop: From genetics to diagnostic criteria.

Authors:  Scott R Plotkin; Jaishri O Blakeley; D Gareth Evans; C Oliver Hanemann; Theo J M Hulsebos; Kim Hunter-Schaedle; Ganjam V Kalpana; Bruce Korf; Ludwine Messiaen; Laura Papi; Nancy Ratner; Larry S Sherman; Miriam J Smith; Anat O Stemmer-Rachamimov; Jeremie Vitte; Marco Giovannini
Journal:  Am J Med Genet A       Date:  2013-02-07       Impact factor: 2.802

4.  Identification of MyoD Interactome Using Tandem Affinity Purification Coupled to Mass Spectrometry.

Authors:  Ekaterina Boyarchuk; Philippe Robin; Lauriane Fritsch; Véronique Joliot; Slimane Ait-Si-Ali
Journal:  J Vis Exp       Date:  2016-05-17       Impact factor: 1.355

Review 5.  Sculpting chromatin beyond the double helix: epigenetic control of skeletal myogenesis.

Authors:  Vittorio Sartorelli; Aster H Juan
Journal:  Curr Top Dev Biol       Date:  2011       Impact factor: 4.897

Review 6.  Therapeutic advances for the tumors associated with neurofibromatosis type 1, type 2, and schwannomatosis.

Authors:  Jaishri O Blakeley; Scott R Plotkin
Journal:  Neuro Oncol       Date:  2016-02-06       Impact factor: 12.300

7.  Non-viral expression of mouse Oct4, Sox2, and Klf4 transcription factors efficiently reprograms tadpole muscle fibers in vivo.

Authors:  Céline Vivien; Pierluigi Scerbo; Fabrice Girardot; Karine Le Blay; Barbara A Demeneix; Laurent Coen
Journal:  J Biol Chem       Date:  2012-01-09       Impact factor: 5.157

Review 8.  SWI/SNF-directed stem cell lineage specification: dynamic composition regulates specific stages of skeletal myogenesis.

Authors:  Paula Coutinho Toto; Pier Lorenzo Puri; Sonia Albini
Journal:  Cell Mol Life Sci       Date:  2016-05-20       Impact factor: 9.261

9.  Functional studies of the Ciona intestinalis myogenic regulatory factor reveal conserved features of chordate myogenesis.

Authors:  Stephanie A Izzi; Bonnie J Colantuono; Kelly Sullivan; Parul Khare; Thomas H Meedel
Journal:  Dev Biol       Date:  2013-02-04       Impact factor: 3.582

10.  The methyltransferase SMYD3 mediates the recruitment of transcriptional cofactors at the myostatin and c-Met genes and regulates skeletal muscle atrophy.

Authors:  Valentina Proserpio; Raffaella Fittipaldi; James G Ryall; Vittorio Sartorelli; Giuseppina Caretti
Journal:  Genes Dev       Date:  2013-06-01       Impact factor: 11.361

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