Literature DB >> 20542904

Effect of storage conditions of dried plasma and blood spots on HIV-1 RNA quantification and PCR amplification for drug resistance genotyping.

Marjorie Monleau1, Christelle Butel, Eric Delaporte, Francois Boillot, Martine Peeters.   

Abstract

OBJECTIVES: Dried blood spots (DBS) and dried plasma spots (DPS) are easy to collect and store, and have been successfully tested as an alternative to plasma for performing virological analyses. Adequate storage conditions still need to be established and cell-associated proviral DNA in DBS can contribute to the amplified products. We evaluated these two parameters.
METHODS: Residual samples from 34 HIV-1-infected patients [mean viral load (VL) = 3.93 log(10) copies/mL] were used to prepare DPS and DBS, then stored at 20 degrees C and 37 degrees C. HIV-1 nucleic acids were extracted, with or without DNase treatments, to perform HIV-1 VL quantification and nested RT-PCR to amplify the reverse transcriptase gene (798 bp).
RESULTS: For DBS stored for 3 months at 20 degrees C, VL could be measured for all samples and results were comparable to plasma VL. At 37 degrees C, a slight decrease was observed after 2 and 3 months (0.16 and 0.37 log(10) copies/mL mean difference, respectively). For DPS, a significant decrease in VL (0.70 and 1.07 log(10) copies/mL after 1 and 2 months, respectively) was seen at 37 degrees C, but not at 20 degrees C. PCR amplifications from DPS were only successful for 50% of samples with an initial VL >10 000 copies/mL after 1 month at 20 degrees C. From DBS, PCR amplifications are possible until 3 months for samples with plasma VL >5000 copies/mL. VL and PCR results for DBS treated with DNase are close to results obtained for DPS.
CONCLUSIONS: Virological monitoring is still feasible for DBS after 3 months of storage at 37 degrees C when VL is >5000 copies/mL, but DNA contributes largely to the final results.

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Year:  2010        PMID: 20542904     DOI: 10.1093/jac/dkq205

Source DB:  PubMed          Journal:  J Antimicrob Chemother        ISSN: 0305-7453            Impact factor:   5.790


  34 in total

1.  Higher specificity of nucleic acid sequence-based amplification isothermal technology than of real-time PCR for quantification of HIV-1 RNA on dried blood spots.

Authors:  Severine Mercier-Delarue; Muriel Vray; Jean Christophe Plantier; Theodora Maillard; Zidan Adjout; Fabienne de Olivera; Nathalie Schnepf; Sarah Maylin; Francois Simon; Constance Delaugerre
Journal:  J Clin Microbiol       Date:  2013-10-16       Impact factor: 5.948

2.  Comparison of Ahlstrom grade 226, Munktell TFN, and Whatman 903 filter papers for dried blood spot specimen collection and subsequent HIV-1 load and drug resistance genotyping analysis.

Authors:  Erin Rottinghaus; Ebi Bile; Mosetsanagape Modukanele; Maruping Maruping; Madisa Mine; John Nkengasong; Chunfu Yang
Journal:  J Clin Microbiol       Date:  2012-10-17       Impact factor: 5.948

3.  Prospective evaluation of diagnostic accuracy of dried blood spots from finger prick samples for determination of HIV-1 load with the NucliSENS Easy-Q HIV-1 version 2.0 assay in Malawi.

Authors:  Emmanuel Fajardo; Carol A Metcalf; Pascale Chaillet; Lucia Aleixo; Pieter Pannus; Isabella Panunzi; Laura Triviño; Tom Ellman; Andrew Likaka; Reuben Mwenda
Journal:  J Clin Microbiol       Date:  2014-02-05       Impact factor: 5.948

4.  Field evaluation of dried blood spots for routine HIV-1 viral load and drug resistance monitoring in patients receiving antiretroviral therapy in Africa and Asia.

Authors:  Marjorie Monleau; Avelin F Aghokeng; Sabrina Eymard-Duvernay; Anoumou Dagnra; Dramane Kania; Nicole Ngo-Giang-Huong; Coumba Touré-Kane; Lien X T Truong; Marie-Laure Chaix; Eric Delaporte; Ahidjo Ayouba; Martine Peeters
Journal:  J Clin Microbiol       Date:  2013-12-11       Impact factor: 5.948

5.  Identification and molecular characterization of new simian T cell lymphotropic viruses in nonhuman primates bushmeat from the Democratic Republic of Congo.

Authors:  Steve Ahuka-Mundeke; Placide Mbala-Kingebeni; Florian Liegeois; Ahidjo Ayouba; Octavie Lunguya-Metila; Didace Demba; Guy Bilulu; Valentin Mbenzo-Abokome; Bila-Isia Inogwabini; Jean-Jacques Muyembe-Tamfum; Eric Delaporte; Martine Peeters
Journal:  AIDS Res Hum Retroviruses       Date:  2011-09-14       Impact factor: 2.205

Review 6.  Diagnosis of Human Immunodeficiency Virus Infection.

Authors:  Bharat S Parekh; Chin-Yih Ou; Peter N Fonjungo; Mireille B Kalou; Erin Rottinghaus; Adrian Puren; Heather Alexander; Mackenzie Hurlston Cox; John N Nkengasong
Journal:  Clin Microbiol Rev       Date:  2018-11-28       Impact factor: 26.132

7.  Single real-time reverse transcription-PCR assay for detection and quantification of genetically diverse HIV-1, SIVcpz, and SIVgor strains.

Authors:  Lucie Etienne; Sabrina Eymard-Duvernay; Avelin Aghokeng; Christelle Butel; Marjorie Monleau; Martine Peeters
Journal:  J Clin Microbiol       Date:  2012-12-19       Impact factor: 5.948

8.  Pyrosequencing dried blood spots reveals differences in HIV drug resistance between treatment naïve and experienced patients.

Authors:  Hezhao Ji; Yang Li; Binhua Liang; Richard Pilon; Paul MacPherson; Michèle Bergeron; John Kim; Morag Graham; Gary Van Domselaar; Paul Sandstrom; James Brooks
Journal:  PLoS One       Date:  2013-02-07       Impact factor: 3.240

9.  Alternative Sample Types for HIV-1 Antiretroviral Drug Resistance Testing.

Authors:  Dolly Singh; Adit Dhummakupt; Lilly Siems; Deborah Persaud
Journal:  J Infect Dis       Date:  2017-12-01       Impact factor: 5.226

10.  Field study of dried blood spot specimens for HIV-1 drug resistance genotyping.

Authors:  C M Parry; N Parkin; K Diallo; S Mwebaza; R Batamwita; J DeVos; N Bbosa; F Lyagoba; B Magambo; M R Jordan; R Downing; G Zhang; P Kaleebu; C Yang; S Bertagnolio
Journal:  J Clin Microbiol       Date:  2014-05-28       Impact factor: 5.948

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