Literature DB >> 20540587

Dynamic behaviors of interactions: application of normal coordinates of internal vibrations to AIM dual functional analysis.

Waro Nakanishi1, Satoko Hayashi.   

Abstract

A method to evaluate the dynamic nature of interactions is proposed based on the AIM dual functional analysis. Normal coordinates of internal vibrations (NIV) are employed to generate the perturbed structures necessary for the analysis. H(b)(r(c)) are plotted versus H(b)(r(c))-V(b)(r(c))/2 [= (variant Planck's over 2pi(2)/8m)nabla(2)rho(b)(r(c))] at bond critical points for the purpose. The plots are represented by the polar (R, theta) coordinate. Each plot for an interaction shows a specific curve, which is expressed by (theta(p), kappa(p)): theta(p) corresponds to the tangent line for the plot from the y-direction, and kappa(p) is the curvature. Although (R, theta) values correspond to the static nature of interactions, (theta(p), kappa(p)) values show the dynamic nature. The applicability of NIV is examined exemplified by the charge-transfer interactions as the first step to analyze the dynamic behaviors of interactions with NIV. The (theta(p), kappa(p)) values evaluated with NIV are very close to those obtained by the partial-optimization method (POM), where the distances or angles in question are fixed suitably, if the internal vibrations are substantially located on the interactions in question. The magnitudes of differences in theta(p) and kappa(p) between those evaluated with NIV and POM are < or = 2 degrees and < or = 2 au(-1), respectively, for usual interactions. The treatment is demonstrated to be applicable to a wide range of interactions.

Year:  2010        PMID: 20540587     DOI: 10.1021/jp104278j

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  10 in total

1.  High-resolution X-ray diffraction determination of the electron density of 1-(8-PhSC10H6)SS(C10H6SPh-8')-1' with the QTAIM approach: evidence for S4 σ(4c-6e) at the naphthalene peri-positions.

Authors:  Yutaka Tsubomoto; Satoko Hayashi; Waro Nakanishi; Lucy K Mapp; Simon J Coles
Journal:  RSC Adv       Date:  2018-03-05       Impact factor: 4.036

2.  Behaviour of the XH-*-π and YX-*-π interactions (X, Y = F, Cl, Br and I) in the coronene π-system, as elucidated by QTAIM dual functional analysis with QC calculations.

Authors:  Satoko Hayashi; Yuji Sugibayashi; Waro Nakanishi
Journal:  RSC Adv       Date:  2018-05-03       Impact factor: 4.036

3.  Intrinsic dynamic and static nature of each HB in the multi-HBs between nucleobase pairs and its behavior, elucidated with QTAIM dual functional analysis and QC calculations.

Authors:  Waro Nakanishi; Satoko Hayashi; Taro Nishide
Journal:  RSC Adv       Date:  2020-07-01       Impact factor: 3.361

4.  Intrinsic Dynamic Nature of Neutral Hydrogen Bonds Elucidated with QTAIM Dual Functional Analysis: Role of the Compliance Force Constants and QTAIM-DFA Parameters in Stability.

Authors:  Taro Nishide; Satoko Hayashi; Waro Nakanishi
Journal:  ChemistryOpen       Date:  2018-06-06       Impact factor: 2.911

5.  Behavior of the E-E' Bonds (E, E' = S and Se) in Glutathione Disulfide and Derivatives Elucidated by Quantum Chemical Calculations with the Quantum Theory of Atoms-in-Molecules Approach.

Authors:  Satoko Hayashi; Yutaka Tsubomoto; Waro Nakanishi
Journal:  Molecules       Date:  2018-02-17       Impact factor: 4.411

6.  Linear Multiselenium Interactions in Dicationic Oligomers of 1,5-(Diselena)canes: Behavior of Semc σ(mc c-ne e) (6≤mc ≤16) Elucidated with QTAIM Dual Functional Analysis.

Authors:  Satoko Hayashi; Taro Nishide; Kengo Nagata; Waro Nakanishi
Journal:  ChemistryOpen       Date:  2021-05-02       Impact factor: 2.630

7.  Intrinsic Dynamic and Static Nature of π···π Interactions in Fused Benzene-Type Helicenes and Dimers, Elucidated with QTAIM Dual Functional Analysis.

Authors:  Taro Nishide; Satoko Hayashi
Journal:  Nanomaterials (Basel)       Date:  2022-01-19       Impact factor: 5.076

8.  The nature of G⋯E-Y σ(3c-4e) in o-Me n GCH2C6H4EY (Me n G = Me2N and MeE; E = O, S, Se and Te; Y = F, Cl, Br, EMe and Me) with contributions from CT and compliance constants in noncovalent G⋯E interactions.

Authors:  Satoko Hayashi; Taro Nishide; Waro Nakanishi; Luca Sancineto; Claudio Santi
Journal:  RSC Adv       Date:  2019-11-29       Impact factor: 3.361

9.  Nature of intramolecular O-H⋯π interactions as elucidated by QTAIM dual functional analysis with QC calculations.

Authors:  Satoko Hayashi; Taro Nishide; Waro Nakanishi
Journal:  RSC Adv       Date:  2019-05-17       Impact factor: 4.036

10.  Intrinsic Dynamic and Static Nature of Halogen Bonding in Neutral Polybromine Clusters, with the Structural Feature Elucidated by QTAIM Dual-Functional Analysis and MO Calculations.

Authors:  Satoko Hayashi; Taro Nishide; Eiichiro Tanaka; Waro Nakanishi
Journal:  Molecules       Date:  2021-05-14       Impact factor: 4.411

  10 in total

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