Literature DB >> 20154666

Turning enzymes ON with small molecules.

Julie A Zorn1, James A Wells.   

Abstract

Drug discovery and chemical genetic efforts typically focus on the identification and design of inhibitors or loss-of-function probes as a means to perturb enzyme function. These tools are effective in determining the physiological consequence of ablating the activity of a specific enzyme. Remarkably, nearly a dozen examples of non-natural small molecules that activate enzyme catalysis have been identified within the past decade. In aggregate, these studies delineate four unique activation mechanisms that the small molecules exploit. These complementary gain-of-function probes offer a way to address the sufficiency of an enzyme to drive a particular cellular phenotype, and they also provide new opportunities for drug discovery. This review covers the identification and characterization of these unique small-molecule activators.

Year:  2010        PMID: 20154666     DOI: 10.1038/nchembio.318

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  109 in total

1.  Structure and allosteric effects of low-molecular-weight activators on the protein kinase PDK1.

Authors:  Valerie Hindie; Adriana Stroba; Hua Zhang; Laura A Lopez-Garcia; Leila Idrissova; Stefan Zeuzem; Daniel Hirschberg; Francis Schaeffer; Thomas J D Jørgensen; Matthias Engel; Pedro M Alzari; Ricardo M Biondi
Journal:  Nat Chem Biol       Date:  2009-08-30       Impact factor: 15.040

2.  A physical map of the human genome.

Authors:  J D McPherson; M Marra; L Hillier; R H Waterston; A Chinwalla; J Wallis; M Sekhon; K Wylie; E R Mardis; R K Wilson; R Fulton; T A Kucaba; C Wagner-McPherson; W B Barbazuk; S G Gregory; S J Humphray; L French; R S Evans; G Bethel; A Whittaker; J L Holden; O T McCann; A Dunham; C Soderlund; C E Scott; D R Bentley; G Schuler; H C Chen; W Jang; E D Green; J R Idol; V V Maduro; K T Montgomery; E Lee; A Miller; S Emerling; R Gibbs; S Scherer; J H Gorrell; E Sodergren; K Clerc-Blankenburg; P Tabor; S Naylor; D Garcia; P J de Jong; J J Catanese; N Nowak; K Osoegawa; S Qin; L Rowen; A Madan; M Dors; L Hood; B Trask; C Friedman; H Massa; V G Cheung; I R Kirsch; T Reid; R Yonescu; J Weissenbach; T Bruls; R Heilig; E Branscomb; A Olsen; N Doggett; J F Cheng; T Hawkins; R M Myers; J Shang; L Ramirez; J Schmutz; O Velasquez; K Dixon; N E Stone; D R Cox; D Haussler; W J Kent; T Furey; S Rogic; S Kennedy; S Jones; A Rosenthal; G Wen; M Schilhabel; G Gloeckner; G Nyakatura; R Siebert; B Schlegelberger; J Korenberg; X N Chen; A Fujiyama; M Hattori; A Toyoda; T Yada; H S Park; Y Sakaki; N Shimizu; S Asakawa; K Kawasaki; T Sasaki; A Shintani; A Shimizu; K Shibuya; J Kudoh; S Minoshima; J Ramser; P Seranski; C Hoff; A Poustka; R Reinhardt; H Lehrach
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

3.  Characteristics necessary for an interconvertible enzyme cascade to generate a highly sensitive response to an effector.

Authors:  M L Cárdenas; A Cornish-Bowden
Journal:  Biochem J       Date:  1989-01-15       Impact factor: 3.857

4.  A phosphoserine/threonine-binding pocket in AGC kinases and PDK1 mediates activation by hydrophobic motif phosphorylation.

Authors:  Morten Frödin; Torben L Antal; Bettina A Dümmler; Claus J Jensen; Maria Deak; Steen Gammeltoft; Ricardo M Biondi
Journal:  EMBO J       Date:  2002-10-15       Impact factor: 11.598

5.  The SIR2/3/4 complex and SIR2 alone promote longevity in Saccharomyces cerevisiae by two different mechanisms.

Authors:  M Kaeberlein; M McVey; L Guarente
Journal:  Genes Dev       Date:  1999-10-01       Impact factor: 11.361

Review 6.  The network of glucokinase-expressing cells in glucose homeostasis and the potential of glucokinase activators for diabetes therapy.

Authors:  Franz M Matschinsky; Mark A Magnuson; Dorothy Zelent; Tom L Jetton; Nicolai Doliba; Yi Han; Rebecca Taub; Joseph Grimsby
Journal:  Diabetes       Date:  2006-01       Impact factor: 9.461

7.  3,5-Diphenylpent-2-enoic acids as allosteric activators of the protein kinase PDK1: structure-activity relationships and thermodynamic characterization of binding as paradigms for PIF-binding pocket-targeting compounds.

Authors:  Adriana Stroba; Francis Schaeffer; Valerie Hindie; Laura Lopez-Garcia; Iris Adrian; Wolfgang Fröhner; Rolf W Hartmann; Ricardo M Biondi; Matthias Engel
Journal:  J Med Chem       Date:  2009-08-13       Impact factor: 7.446

8.  Small molecule activators of sirtuins extend Saccharomyces cerevisiae lifespan.

Authors:  Konrad T Howitz; Kevin J Bitterman; Haim Y Cohen; Dudley W Lamming; Siva Lavu; Jason G Wood; Robert E Zipkin; Phuong Chung; Anne Kisielewski; Li-Li Zhang; Brandy Scherer; David A Sinclair
Journal:  Nature       Date:  2003-08-24       Impact factor: 49.962

9.  Small molecule-induced allosteric activation of the Vibrio cholerae RTX cysteine protease domain.

Authors:  Patrick J Lupardus; Aimee Shen; Matthew Bogyo; K Christopher Garcia
Journal:  Science       Date:  2008-10-10       Impact factor: 47.728

10.  Mechanistic and structural insights into the proteolytic activation of Vibrio cholerae MARTX toxin.

Authors:  Aimee Shen; Patrick J Lupardus; Victoria E Albrow; Andrew Guzzetta; James C Powers; K Christopher Garcia; Matthew Bogyo
Journal:  Nat Chem Biol       Date:  2009-07       Impact factor: 15.040

View more
  87 in total

Review 1.  Allosteric regulation of protease activity by small molecules.

Authors:  Aimee Shen
Journal:  Mol Biosyst       Date:  2010-06-10

Review 2.  Development and application of bond cleavage reactions in bioorthogonal chemistry.

Authors:  Jie Li; Peng R Chen
Journal:  Nat Chem Biol       Date:  2016-03       Impact factor: 15.040

3.  Self-assembling small molecules form nanofibrils that bind procaspase-3 to promote activation.

Authors:  Julie A Zorn; Holger Wille; Dennis W Wolan; James A Wells
Journal:  J Am Chem Soc       Date:  2011-11-17       Impact factor: 15.419

4.  Exploiting conformational dynamics in drug discovery: design of C-terminal inhibitors of Hsp90 with improved activities.

Authors:  Elisabetta Moroni; Huiping Zhao; Brian S J Blagg; Giorgio Colombo
Journal:  J Chem Inf Model       Date:  2014-01-15       Impact factor: 4.956

5.  Palladium-triggered deprotection chemistry for protein activation in living cells.

Authors:  Jie Li; Juntao Yu; Jingyi Zhao; Jie Wang; Siqi Zheng; Shixian Lin; Long Chen; Maiyun Yang; Shang Jia; Xiaoyu Zhang; Peng R Chen
Journal:  Nat Chem       Date:  2014-03-16       Impact factor: 24.427

6.  Cardiac myosin activation: a potential therapeutic approach for systolic heart failure.

Authors:  Fady I Malik; James J Hartman; Kathleen A Elias; Bradley P Morgan; Hector Rodriguez; Katjusa Brejc; Robert L Anderson; Sandra H Sueoka; Kenneth H Lee; Jeffrey T Finer; Roman Sakowicz; Ramesh Baliga; David R Cox; Marc Garard; Guillermo Godinez; Raja Kawas; Erica Kraynack; David Lenzi; Pu Ping Lu; Alexander Muci; Congrong Niu; Xiangping Qian; Daniel W Pierce; Maria Pokrovskii; Ion Suehiro; Sheila Sylvester; Todd Tochimoto; Corey Valdez; Wenyue Wang; Tatsuo Katori; David A Kass; You-Tang Shen; Stephen F Vatner; David J Morgans
Journal:  Science       Date:  2011-03-18       Impact factor: 47.728

7.  Identification of small-molecule enhancers of arginine methylation catalyzed by coactivator-associated arginine methyltransferase 1.

Authors:  Sabrina Castellano; Astrid Spannhoff; Ciro Milite; Fabrizio Dal Piaz; Donghang Cheng; Alessandra Tosco; Monica Viviano; Abdellah Yamani; Agostino Cianciulli; Marina Sala; Vincent Cura; Jean Cavarelli; Ettore Novellino; Antonello Mai; Mark T Bedford; Gianluca Sbardella
Journal:  J Med Chem       Date:  2012-11-02       Impact factor: 7.446

8.  Bile Acid Recognition by NAPE-PLD.

Authors:  Eleonora Margheritis; Beatrice Castellani; Paola Magotti; Sara Peruzzi; Elisa Romeo; Francesca Natali; Serena Mostarda; Antimo Gioiello; Daniele Piomelli; Gianpiero Garau
Journal:  ACS Chem Biol       Date:  2016-09-12       Impact factor: 5.100

9.  A TR-FRET-based functional assay for screening activators of CARM1.

Authors:  Hao Zeng; Jiacai Wu; Mark T Bedford; Gianluca Sbardella; F Michael Hoffmann; Kun Bi; Wei Xu
Journal:  Chembiochem       Date:  2013-04-12       Impact factor: 3.164

10.  Dynamics-Based Discovery of Allosteric Inhibitors: Selection of New Ligands for the C-terminal Domain of Hsp90.

Authors:  Giulia Morra; Marco A C Neves; Christopher J Plescia; Shinji Tsustsumi; Len Neckers; Gennady Verkhivker; Dario C Altieri; Giorgio Colombo
Journal:  J Chem Theory Comput       Date:  2010-08-30       Impact factor: 6.006

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.