| Literature DB >> 20522590 |
Yunhua L Muller1, Robert L Hanson, Li Bian, Janel Mack, Xiaolian Shi, Ruth Pakyz, Alan R Shuldiner, William C Knowler, Clifton Bogardus, Leslie J Baier.
Abstract
OBJECTIVE: MBL2 encodes the mannose-binding lectin, which is a key player in the innate immune system and has recently been found to play a role in insulin resistance and development of type 1 diabetes and gestational diabetes mellitus. To assess the role of MBL2 in diabetes susceptibility, this gene was analyzed in the Pima Indian population, which has a high prevalence of type 2 diabetes. RESEARCH DESIGN AND METHODS: Nineteen tag single nucleotide polymorphisms (SNPs) were genotyped in a population-based sample of 3,501 full-heritage Pima Indians, and selected SNPs were further genotyped in independent samples of Native American (n = 3,723) and Old Order Amish (n = 486) subjects.Entities:
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Year: 2010 PMID: 20522590 PMCID: PMC2911048 DOI: 10.2337/db09-1593
Source DB: PubMed Journal: Diabetes ISSN: 0012-1797 Impact factor: 9.461
Associations of MBL2 tag SNPs with type 2 diabetes in Pima Indians
| SNP | Location | Risk/non-risk | Full-heritage Pima Indian ( | Replication mixed heritage ( | Combined ( | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| AF | OR (95% CI) | AF | OR (95% CI) | OR (95% CI) | ||||||
| rs920727 | 3′-flanking | 0.90 | 1.23 (1.01–1.51) | 0.05 | ||||||
| rs11003107 | 3′-flanking | C/T | 0.99 | 1.04 (0.69–1.56) | 0.85 | |||||
| rs11003120 | 3′-flanking | C/T | 0.99 | 4.05 (0.87–18.5) | 0.07 | |||||
| rs10082466 | 3′UTR | T/C | 0.92 | 1.12 (0.89–1.40) | 0.32 | |||||
| Novel: 3′UTR | 3′UTR | A/G | 0.08 | 1.12 (0.90–1.42) | 0.32 | |||||
| rs930507 | Leu126Leu | C/G | 0.98 | 1.27 (0.86–1.88) | 0.22 | |||||
| rs10824793 | Intron 2 | A/G | 0.95 | 1.27 (0.97–1.65) | 0.08 | |||||
| rs55902142 | Intron 2 | 0.01 | 1.76 (1.00–3.10) | 0.05 | ||||||
| rs1800451 | Gly57Glu (A/C) | G/A | 0.99 | 1.17 (0.14–9.80) | 0.88 | |||||
| rs1800450 | Gly54Asp (A/B) | 0.83 | 1.30 (1.10–1.53) | 0.002 | 0.83 | 1.12 (0.94–1.40) | 0.18 | 1.24 (1.09–1.40) | 0.001 | |
| rs5030737 | Arg52Cys (A/D) | C/T | 0.99 | 1.95 (0.47–8.06) | 0.35 | |||||
| rs7095891 | Promoter (P/Q) | C/T | 0.97 | 1.28 (0.88–1.88) | 0.19 | 0.91 | 1.05 (0.80–1.39) | 0.69 | 1.13 (0.91–1.41) | 0.28 |
| rs7096206 | Promoter (Y/X) | G/C | 0.99 | 2.20 (0.92–5.21) | 0.07 | |||||
| rs11003125 | Promoter (H/l) | 0.77 | 1.30 (1.12–1.51) | 0.0007 | 0.68 | 1.19 (1.01–1.41) | 0.04 | 1.25 (1.12–1.40) | 9.2 × 10−5 | |
| Novel: promoter | Promoter | G/A | 0.98 | 1.20 (0.69–2.08) | 0.51 | |||||
| rs11003132 | 5′-flanking | C/T | 0.99 | 1.47 (0.79–2.74) | 0.22 | |||||
| rs10762885 | 5′-flanking | A/G | 0.97 | 1.24 (0.87–1.76) | 0.22 | |||||
| rs11003138 | 5′-flanking | C/T | 0.91 | 1.14 (0.92–1.40) | 0.23 | |||||
| rs10824804 | 5′-flanking | 0.88 | 1.28 (1.05–1.57) | 0.02 | ||||||
Nineteen tag SNPs (R2 ≥0.8) were selected from 57 SNPs that span MBL2 (∼8.3 kb) and approximately 25 kb flanking each side of the gene. Allele frequency (AF) is presented as frequency of the risk allele. OR is expressed as per copy of the risk allele (and thus, by definition, is >1). The risk allele is underlined where the P value is ≤0.05.
*Genotypes were determined according to the reverse strand of the SNP database sequence. Sequences flanking the two novel SNPs are as follows: novel: promoter, tttcatggatgggtgtgtgc[g/a]tgcatgcacgtgtctgtgtg; novel: 3′UTR, catgactgcacagtaatttc[g/a]tctgtttataaacattgtat.
Association of promoter rs1103125 and rs1800450 (Gly54Asp) with type 2 diabetes in Pima Indian, Amish, and DIAGRAM subjects
| rs11003125 | rs1800450 | |||||
|---|---|---|---|---|---|---|
| OR (95% CI) | OR (95% CI) | |||||
| Native American | ||||||
| Full-heritage Pima Indian | 1.30 (1.12–1.51) | 0.0007 | 1.30 (1.10–1.53) | 0.002 | ||
| Replication mixed heritage | 1.19 (1.01–1.41) | 0.04 | 1.15 (0.94–1.40) | 0.18 | ||
| Combined | 1.25 (1.12–1.40) | 9.2 × 10−5 | 0.45 | 1.24 (1.09–1.40) | 0.001 | 0.35 |
| Caucasian | ||||||
| Amish | 1.51 (1.10–2.08) | 0.004 | 2.38 (1.36–4.17) | 0.003 | ||
| DIAGRAM | 0.97 (0.91–1.03) | 0.35 | ||||
| Combined | 0.99 (0.93–1.05) | 0.66 | 0.008 | |||
| Native American and Caucasian combined | 1.04 (0.98–1.10) | 0.17 | 0.0002 | |||
A combined test was conducted by the inverse variance method. ORs are per copy of the risk allele identified in the full-heritage Pima sample. P is for the null hypothesis that the OR = 1. Phet is the P value for the null hypothesis that the ORs are the same for the combined groups.
*DIAGRAM results based on rs1838065, which has an R2 of 1.0 with rs1103125.
Metabolic characteristics of full-heritage nondiabetic subjects grouped by genotypes of promoter rs11003125 or rs1800450 (Gly54Asp) variants
| rs11003125 (G/C) | rs1800450 (G/A) | |||||||
|---|---|---|---|---|---|---|---|---|
| G/G | G/C | C/C | G/G (Gly/Gly) | G/A (Gly/Asp) | A/A (Asp/Asp) | |||
| Nondiabetic subjects | ||||||||
| | 233 | 134 | 16 | 271 | 108 | 16 | ||
| Percent body fat | 32 ± 0.5 | 33 ± 0.7 | 34 ± 1.9 | 0.60 | 32 ± 0.5 | 33 ± 0.8 | 36 ± 1.8 | 0.86 |
| BMI (kg/m2) | 33 ± 0.5 | 33 ± 0.6 | 34 ± 2.2 | 0.56 | 33 ± 0.4 | 33 ± 0.7 | 37 ± 2.0 | 0.21 |
| Fasting plasma glucose (mg/dl) | 90 ± 0.6 | 89 ± 0.8 | 87 ± 2.2 | 0.09 | 89 ± 0.5 | 89 ± 0.8 | 89 ± 2.5 | 0.29 |
| 60-min plasma glucose (mg/dl) | 150 ± 2.1 | 146 ± 3.0 | 137 ± 7.3 | 0.02 | 149 ± 2.0 | 145 ± 3.5 | 146 ± 7.7 | 0.12 |
| 2-h plasma glucose (mg/dl) | 125 ± 1.9 | 122 ± 2.6 | 106 ± 6.1 | 0.0005 | 124 ± 1.8 | 122 ± 2.9 | 116 ± 8.0 | 0.04 |
| Log fasting plasma insulin (μU/ml) | 1.55 ± 0.01 | 1.54 ± 0.01 | 1.55 ± 0.05 | 0.31 | 1.56 ± 0.01 | 1.52 ± 0.01 | 1.62 ± 0.04 | 0.17 |
| Log 2-h plasma insulin (μU/ml) | 2.22 ± 0.02 | 2.15 ± 0.02 | 2.09 ± 0.07 | 0.0008 | 2.21 ± 0.02 | 2.13 ± 0.03 | 2.17 ± 0.07 | 0.003 |
| Log glucose disposal rate under low-dose insulin clamp (mg · kg EMBS−1 · min−1) | 0.54 ± 0.01 | 0.55 ± 0.01 | 0.53 ± 0.02 | 0.34 | 0.54 ± 0.01 | 0.56 ± 0.01 | 0.50 ± 0.02 | 0.32 |
| Normal glucose tolerant subjects | ||||||||
| 164 | 99 | 9 | 192 | 80 | 9 | |||
| Log acute insulin response (μU/ml) | 2.33 ± 0.02 | 2.35 ± 0.02 | 2.49 ± 0.07 | 0.14 | 2.32 ± 0.04 | 2.37 ± 0.02 | 2.52 ± 0.02 | 0.004 |
| Log 30-min plasma insulin (μU/ml) | 2.34 ± 0.01 | 2.34 ± 0.02 | 2.41 ± 0.13 | 0.31 | 2.34 ± 0.01 | 2.35 ± 0.02 | 2.40 ± 0.12 | 0.27 |
Data are means ± SE unless otherwise indicated. Plasma insulin concentrations (fasting, 2 h, and 30 min), rates of glucose disappearance during the low-dose insulin stimulation, and the acute insulin response were log transformed before analyses to approximate a normal distribution. The P value for percent body fat was adjusted for age, sex, and family membership. The P value for the acute insulin response was adjusted for age, sex, percent body fat, and rate of glucose disappearance during the low-dose insulin stimulation. All remaining P values (except for age) were adjusted for age, sex, percent body fat, and family membership. EMBS, estimated metabolic body size.
FIG. 1.Prevalence of type 2 diabetes in the full-heritage Pima Indian group (A) (n = 3,081) and the replication mixed heritage group (B) (n = 3,504) according to genotypes of promoter rs11003125 and rs1800450 (Gly54Asp). *Either homozygous or heterozygous for the Asp alleles.