Literature DB >> 20516614

Crystallization and preliminary X-ray diffraction analysis of various enzyme-substrate complexes of isopropylmalate dehydrogenase from Thermus thermophilus.

Angelo Merli1, Karuppasamy Manikandan, Eva Gráczer, Linda Schuldt, Rajesh Kumar Singh, Péter Závodszky, Mária Vas, Manfred S Weiss.   

Abstract

The Thermus thermophilus 3-isopropylmalate dehydrogenase (Tt-IPMDH) enzyme catalyses the penultimate step of the leucine-biosynthesis pathway. It converts (2R,3S)-3-isopropylmalate to (2S)-2-isopropyl-3-oxosuccinate in the presence of divalent Mg(2+) or Mn(2+) and with the help of NAD(+). In order to elucidate the detailed structural and functional mode of the enzymatic reaction, crystals of Tt-IPMDH were grown in the presence of various combinations of substrate and/or cofactors. Here, the crystallization, data collection and preliminary crystallographic analyses of six such complexes are reported.

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Year:  2010        PMID: 20516614      PMCID: PMC2882784          DOI: 10.1107/S174430911001626X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  22 in total

1.  SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model.

Authors:  A A Vaguine; J Richelle; S J Wodak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

2.  Purification and characterization of recombinant 3-isopropylmalate dehydrogenases from Thermus thermophilus and other microorganisms.

Authors:  Y Hayashi-Iwasaki; T Oshima
Journal:  Methods Enzymol       Date:  2000       Impact factor: 1.600

3.  Identification of specific interactions that drive ligand-induced closure in five enzymes with classic domain movements.

Authors:  Steven Hayward
Journal:  J Mol Biol       Date:  2004-06-11       Impact factor: 5.469

4.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

Review 5.  Exploring the range of protein flexibility, from a structural proteomics perspective.

Authors:  Mark Gerstein; Nathaniel Echols
Journal:  Curr Opin Chem Biol       Date:  2004-02       Impact factor: 8.822

6.  Three-dimensional structure of a highly thermostable enzyme, 3-isopropylmalate dehydrogenase of Thermus thermophilus at 2.2 A resolution.

Authors:  K Imada; M Sato; N Tanaka; Y Katsube; Y Matsuura; T Oshima
Journal:  J Mol Biol       Date:  1991-12-05       Impact factor: 5.469

7.  Mirror image mutations reveal the significance of an intersubunit ion cluster in the stability of 3-isopropylmalate dehydrogenase.

Authors:  A Németh; A Svingor; M Pócsik; J Dobó; C Magyar; A Szilágyi; P Gál; P Závodszky
Journal:  FEBS Lett       Date:  2000-02-18       Impact factor: 4.124

8.  The high-resolution Structure of LeuB (Rv2995c) from Mycobacterium tuberculosis.

Authors:  Rajesh Kumar Singh; Georgia Kefala; Robert Janowski; Christoph Mueller-Dieckmann; Jens-Peter von Kries; Manfred S Weiss
Journal:  J Mol Biol       Date:  2004-12-23       Impact factor: 5.469

9.  Cryocrystallography of 3-Isopropylmalate dehydrogenase from Thermus thermophilus and its chimeric enzyme.

Authors:  C Nagata; H Moriyama; N Tanaka; M Nakasako; M Yamamoto; T Ueki; T Oshima
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-07-01

10.  Crystallization and preliminary X-ray studies of a Bacillus subtilis and Thermus thermophilus HB8 chimeric 3-isopropylmalate dehydrogenase and thermostable mutants of it.

Authors:  M Sakurai; K Onodera; H Moriyama; O Matsumoto; N Tanaka; K Numata; K Imada; M Sato; Y Katsube; T Oshima
Journal:  J Biochem       Date:  1992-08       Impact factor: 3.387

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