Literature DB >> 15036151

Exploring the range of protein flexibility, from a structural proteomics perspective.

Mark Gerstein1, Nathaniel Echols.   

Abstract

Changes in protein conformation play a vital role in biochemical processes, from biopolymer synthesis to membrane transport. Initial systematizations of protein flexibility, in a database framework, concentrated on the movement of domains and linkers. Movements were described in terms of simple sliding and hinging mechanisms of individual secondary structural elements. Recently, the accelerated pace and sophistication of methods for structural characterization of proteins has allowed high-resolution studies of increasingly complex assemblies and conformational changes. New data emphasize a breadth of possible structural mechanisms, particularly the ability to drastically alter protein architecture and the native flexibility of many structures.

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Year:  2004        PMID: 15036151     DOI: 10.1016/j.cbpa.2003.12.006

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  20 in total

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Journal:  Biophys J       Date:  2006-03-24       Impact factor: 4.033

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Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-27       Impact factor: 11.205

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Journal:  Biophys J       Date:  2006-01-27       Impact factor: 4.033

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Journal:  Biophys J       Date:  2006-02-10       Impact factor: 4.033

5.  Superimposition of protein structures with dynamically weighted RMSD.

Authors:  Di Wu; Zhijun Wu
Journal:  J Mol Model       Date:  2009-07-01       Impact factor: 1.810

6.  Exploring structural variability in X-ray crystallographic models using protein local optimization by torsion-angle sampling.

Authors:  Jennifer L Knight; Zhiyong Zhou; Emilio Gallicchio; Daniel M Himmel; Richard A Friesner; Eddy Arnold; Ronald M Levy
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-03-19

7.  Protein flexibility: coordinate uncertainties and interpretation of structural differences.

Authors:  Alexander A Rashin; Abraham H L Rashin; Robert L Jernigan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-10-22

8.  Large-scale evaluation of dynamically important residues in proteins predicted by the perturbation analysis of a coarse-grained elastic model.

Authors:  Wenjun Zheng; Mustafa Tekpinar
Journal:  BMC Struct Biol       Date:  2009-07-10

9.  Mathematics, thermodynamics, and modeling to address ten common misconceptions about protein structure, folding, and stability.

Authors:  Srebrenka Robic
Journal:  CBE Life Sci Educ       Date:  2010       Impact factor: 3.325

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Authors:  Guilhem Chalancon; Mickey Kosloff; Hatice Ulku Osmanbeyoglu; Saras Saraswathi
Journal:  PLoS Comput Biol       Date:  2010-11-11       Impact factor: 4.475

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