Literature DB >> 20516598

Crystallization and preliminary X-ray crystallographic analysis of L-rhamnose isomerase with a novel high thermostability from Bacillus halodurans.

Thi-Ngoc-Thanh Doan1, Ponnandy Prabhu, Jin-Kwang Kim, Yeh-Jin Ahn, Sampath Natarajan, Lin-Woo Kang, Geon Tae Park, Sang-Boem Lim, Jung-Kul Lee.   

Abstract

L-Rhamnose isomerases catalyze isomerization between L-rhamnose (6-deoxy-L-mannose) and L-rhamnulose (6-deoxy-L-fructose), which is the first step in rhamnose catabolism. L-Rhamnose isomerase from Bacillus halodurans ATCC BAA-125 (BHRI) exhibits interesting characteristics such as high thermostability and selective substrate specificity. BHRI fused with an HHHHHH sequence was purified and crystallized in order to elucidate the molecular basis of its unique enzymatic properties. The crystals were grown by the hanging-drop vapour-diffusion method and belonged to the monoclinic space group P2(1), with unit-cell parameters a = 83.2, b = 164.9, c = 92.0 A, beta = 116.0 degrees . Diffraction data were collected to 2.5 A resolution. According to a Matthews coefficient calculation, there are four monomers in the asymmetric unit with a V(M) of 3.0 A(3) Da(-1) and a solvent content of 59.3%. The initial structure of BHRI has been determined by the molecular-replacement method.

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Year:  2010        PMID: 20516598      PMCID: PMC2882768          DOI: 10.1107/S174430911001256X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  17 in total

1.  Metabolism of L-rhamnose by Escherichia coli. II. The phosphorylation of L-rhamnulose.

Authors:  D M WILSON; S AJL
Journal:  J Bacteriol       Date:  1957-03       Impact factor: 3.490

2.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

3.  Crystallization and preliminary X-ray diffraction studies of L-rhamnose isomerase from Pseudomonas stutzeri.

Authors:  Hiromi Yoshida; Poonperm Wayoon; Goro Takada; Ken Izumori; Shigehiro Kamitori
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-05-31

4.  Likelihood-enhanced fast translation functions.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Laurent C Storoni; Randy J Read
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-03-24

5.  Effect of L-glucose and D-tagatose on bacterial growth in media and a cooked cured ham product.

Authors:  D A Bautista; R B Pegg; P J Shand
Journal:  J Food Prot       Date:  2000-01       Impact factor: 2.077

6.  The structures of L-rhamnose isomerase from Pseudomonas stutzeri in complexes with L-rhamnose and D-allose provide insights into broad substrate specificity.

Authors:  Hiromi Yoshida; Mitsugu Yamada; Yuya Ohyama; Goro Takada; Ken Izumori; Shigehiro Kamitori
Journal:  J Mol Biol       Date:  2006-11-06       Impact factor: 5.469

7.  The Effects of L-glucose on memory in mice are modulated by peripherally acting cholinergic drugs.

Authors:  Catherine J Lawson; Judi Homewood; Alan J Taylor
Journal:  Neurobiol Learn Mem       Date:  2002-01       Impact factor: 2.877

8.  The structure of rhamnose isomerase from Escherichia coli and its relation with xylose isomerase illustrates a change between inter and intra-subunit complementation during evolution.

Authors:  I P Korndörfer; W D Fessner; B W Matthews
Journal:  J Mol Biol       Date:  2000-07-21       Impact factor: 5.469

9.  Bioproduction strategies for rare hexose sugars.

Authors:  Ken Izumori
Journal:  Naturwissenschaften       Date:  2002-03

10.  Cloning, nucleotide sequence, and overexpression of the L-rhamnose isomerase gene from Pseudomonas stutzeri in Escherichia coli.

Authors:  Khim Leang; Goro Takada; Akihiro Ishimura; Masashi Okita; Ken Izumori
Journal:  Appl Environ Microbiol       Date:  2004-06       Impact factor: 4.792

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  1 in total

1.  Effects of monosaccharide composition on quantitative analysis of total sugar content by phenol-sulfuric acid method.

Authors:  Fangfang Yue; Jinrui Zhang; Jiaxin Xu; Tengfei Niu; Xin Lü; Manshun Liu
Journal:  Front Nutr       Date:  2022-08-02
  1 in total

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