Literature DB >> 20516586

Enhancement in the efficiency of polymerase chain reaction by TiO2 nanoparticles: crucial role of enhanced thermal conductivity.

R Abdul Khaliq1, Parshuram J Sonawane, Binu K Sasi, Bhavani S Sahu, T Pradeep, Sarit K Das, Nitish R Mahapatra.   

Abstract

Improvement of the specificity and efficiency of the polymerase chain reaction (PCR) by nanoparticles is an emerging area of research. We observed that TiO(2) nanoparticles of approximately 25 nm diameter caused significant enhancement of PCR efficiency for various types of templates (namely plasmid DNA, genomic DNA and complementary DNA). By a series of experiments, the optimal TiO(2) concentration was determined to be 0.4 nM, which resulted in up to a seven-fold increase in the amount of PCR product. As much as 50% reduction in overall reaction time (by reduction of the number of cycles and the time periods of cycles) was also achieved by utilizing TiO(2) nanoparticles without compromising the PCR yield. Investigations of the mechanism of such PCR enhancement by simulations using the 'Fluent K epsilon turbulent model' provided evidence of faster heat transfer in the presence of TiO(2) nanoparticles. Consistent with these findings, TiO(2) nanoparticles were observed to augment the denaturation of genomic DNA, indicating more efficient thermal conductivity through the reaction buffer. TiO(2) nanoparticle-assisted PCR may be useful for profound reduction of the overall PCR reaction period and for enhanced amplification of DNA amplicons from a variety of samples, including GC-rich templates that are often observed to yield unsatisfactory results.

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Year:  2010        PMID: 20516586     DOI: 10.1088/0957-4484/21/25/255704

Source DB:  PubMed          Journal:  Nanotechnology        ISSN: 0957-4484            Impact factor:   3.874


  9 in total

1.  CdTe quantum dots enhance feasibility of EvaGreen-based real-time PCR with decent amplification fidelity.

Authors:  Fuming Sang; Zhizhou Zhang; Zhong Xu; Xiaolei Ju; Hongyuan Wang; Shuanghua Zhang; Changlu Guo
Journal:  Mol Biotechnol       Date:  2013-07       Impact factor: 2.695

2.  Development of nanoparticle-assisted PCR assay in the rapid detection of brain-eating amoebae.

Authors:  Shobana Gabriel; Abdul Khaliq Rasheed; Ruqaiyyah Siddiqui; Jimmy Nelson Appaturi; Leo Bey Fen; Naveed Ahmed Khan
Journal:  Parasitol Res       Date:  2018-04-20       Impact factor: 2.289

3.  Nano-gold-enhanced LAMP method for qualitative visual detection of Salmonella in milk.

Authors:  ZaiHui Du; ShengHao Lin; JiaLe Li; JingJing Tian; WenTao Xu; KunLun Huang; QingLiang Liu; YanLi Sun
Journal:  Mikrochim Acta       Date:  2022-09-01       Impact factor: 6.408

4.  Enhancing the specificity and efficiency of polymerase chain reaction using polyethyleneimine-based derivatives and hybrid nanocomposites.

Authors:  Weiwei Tong; Xueyan Cao; Shihui Wen; Rui Guo; Mingwu Shen; Jianhua Wang; Xiangyang Shi
Journal:  Int J Nanomedicine       Date:  2012-02-22

5.  Graphene oxide enhances the specificity of the polymerase chain reaction by modifying primer-template matching.

Authors:  Yuanyuan Wang; Fengbang Wang; Hailin Wang; Maoyong Song
Journal:  Sci Rep       Date:  2017-11-28       Impact factor: 4.379

6.  Investigation on Rheological Properties of Water-Based Novel Ternary Hybrid Nanofluids Using Experimental and Taguchi Method.

Authors:  Jalal Mohammed Zayan; Abdul Khaliq Rasheed; Akbar John; Mohammad Khalid; Ahmad Faris Ismail; Abdul Aabid; Muneer Baig
Journal:  Materials (Basel)       Date:  2021-12-21       Impact factor: 3.623

7.  Enhancement of the polymerase chain reaction by tungsten disulfide.

Authors:  Dong Zhang; Yingcun Li; Xuange Zhang; Yongqiang Cheng; Zhengping Li
Journal:  RSC Adv       Date:  2019-03-26       Impact factor: 4.036

8.  Enhancing the specificity of polymerase chain reaction by graphene oxide through surface modification: zwitterionic polymer is superior to other polymers with different charges.

Authors:  Yong Zhong; Lihong Huang; Zhisen Zhang; Yunjing Xiong; Liping Sun; Jian Weng
Journal:  Int J Nanomedicine       Date:  2016-11-11

9.  Development of gold nanoparticles biosensor for ultrasensitive diagnosis of foot and mouth disease virus.

Authors:  Mervat E Hamdy; Michele Del Carlo; Hussein A Hussein; Taher A Salah; Ayman H El-Deeb; Mohamed M Emara; Guilia Pezzoni; Dario Compagnone
Journal:  J Nanobiotechnology       Date:  2018-05-11       Impact factor: 10.435

  9 in total

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