Literature DB >> 20511136

From DNA to proteins via the ribosome: structural insights into the workings of the translation machinery.

Xabier Agirrezabala1, Joachim Frank.   

Abstract

Understanding protein synthesis in bacteria and humans is important for understanding the origin of many human diseases and devising treatments for them. Over the past decade, the field of structural biology has made significant advances in the visualisation of the molecular machinery involved in protein synthesis. It is now possible to discern, at least in outline, the way that interlocking ribosomal components and factors adapt their conformations throughout this process. The determination of structures in various functional contexts, along with the application of kinetic and fluorescent resonance energy transfer approaches to the problem, has given researchers the frame of reference for what remains as the greatest challenge: the complete dynamic portrait of protein synthesis in the cell.

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Year:  2010        PMID: 20511136      PMCID: PMC2976604          DOI: 10.1186/1479-7364-4-4-226

Source DB:  PubMed          Journal:  Hum Genomics        ISSN: 1473-9542            Impact factor:   4.639


  70 in total

1.  A ratchet-like inter-subunit reorganization of the ribosome during translocation.

Authors:  J Frank; R K Agrawal
Journal:  Nature       Date:  2000-07-20       Impact factor: 49.962

2.  GTPase activation of elongation factor EF-Tu by the ribosome during decoding.

Authors:  Jan-Christian Schuette; Frank V Murphy; Ann C Kelley; John R Weir; Jan Giesebrecht; Sean R Connell; Justus Loerke; Thorsten Mielke; Wei Zhang; Pawel A Penczek; V Ramakrishnan; Christian M T Spahn
Journal:  EMBO J       Date:  2009-02-19       Impact factor: 11.598

3.  Following movement of the L1 stalk between three functional states in single ribosomes.

Authors:  Peter V Cornish; Dmitri N Ermolenko; David W Staple; Lee Hoang; Robyn P Hickerson; Harry F Noller; Taekjip Ha
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-03       Impact factor: 11.205

Review 4.  What recent ribosome structures have revealed about the mechanism of translation.

Authors:  T Martin Schmeing; V Ramakrishnan
Journal:  Nature       Date:  2009-10-18       Impact factor: 49.962

Review 5.  Elongation in translation as a dynamic interaction among the ribosome, tRNA, and elongation factors EF-G and EF-Tu.

Authors:  Xabier Agirrezabala; Joachim Frank
Journal:  Q Rev Biophys       Date:  2009-08       Impact factor: 5.318

6.  Structural insight into nascent polypeptide chain-mediated translational stalling.

Authors:  Birgit Seidelt; C Axel Innis; Daniel N Wilson; Marco Gartmann; Jean-Paul Armache; Elizabeth Villa; Leonardo G Trabuco; Thomas Becker; Thorsten Mielke; Klaus Schulten; Thomas A Steitz; Roland Beckmann
Journal:  Science       Date:  2009-10-29       Impact factor: 47.728

7.  Structures of the ribosome in intermediate states of ratcheting.

Authors:  Wen Zhang; Jack A Dunkle; Jamie H D Cate
Journal:  Science       Date:  2009-08-21       Impact factor: 47.728

Review 8.  A structural view on the mechanism of the ribosome-catalyzed peptide bond formation.

Authors:  Miljan Simonović; Thomas A Steitz
Journal:  Biochim Biophys Acta       Date:  2009-07-09

9.  The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA.

Authors:  T Martin Schmeing; Rebecca M Voorhees; Ann C Kelley; Yong-Gui Gao; Frank V Murphy; John R Weir; V Ramakrishnan
Journal:  Science       Date:  2009-10-15       Impact factor: 47.728

10.  Comprehensive molecular structure of the eukaryotic ribosome.

Authors:  Derek J Taylor; Batsal Devkota; Andrew D Huang; Maya Topf; Eswar Narayanan; Andrej Sali; Stephen C Harvey; Joachim Frank
Journal:  Structure       Date:  2009-12-09       Impact factor: 5.006

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  2 in total

1.  Structure and mechanical properties of the ribosomal L1 stalk three-way junction.

Authors:  Kamila Réblová; Jirí Sponer; Filip Lankas
Journal:  Nucleic Acids Res       Date:  2012-03-26       Impact factor: 16.971

2.  Structural Studies Reveal the Role of Helix 68 in the Elongation Step of Protein Biosynthesis.

Authors:  Giuseppe Cimicata; Gil Fridkin; Tanaya Bose; Zohar Eyal; Yehuda Halfon; Elinor Breiner-Goldstein; Tara Fox; Ella Zimmerman; Anat Bashan; Natalia de Val; Alexander Wlodawer; Ada Yonath
Journal:  mBio       Date:  2022-03-29       Impact factor: 7.786

  2 in total

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