Literature DB >> 20507077

Bisamidate and mixed amine/amidate NiN2S2 complexes as models for nickel-containing acetyl coenzyme A synthase and superoxide dismutase: an experimental and computational study.

Vaidyanathan Mathrubootham1, Jason Thomas, Richard Staples, John McCraken, Jason Shearer, Eric L Hegg.   

Abstract

The distal nickel site of acetyl-CoA synthase (Ni(d)-ACS) and reduced nickel superoxide dismutase (Ni-SOD) display similar square-planar Ni(II)N(2)S(2) coordination environments. One difference between these two sites, however, is that the nickel ion in Ni-SOD contains a mixed amine/amidate coordination motif while the Ni(d) site in Ni-ACS contains a bisamidate coordination motif. To provide insight into the consequences of the different coordination environments on the properties of the Ni ions, we systematically examined two square-planar Ni(II)N(2)S(2) complexes, one with bisthiolate-bisamidate ligation (Et(4)N)(2)(Ni(L1)).2H(2)O (2) [H(4)L1 = N-(2-mercaptoacetyl)-N'-(2-mercaptoethyl)glycinamide] and another with bisthiolate-amine/amidate ligation K(Ni(HL2)) (3) [H(4)L2 = N-(2''-mercaptoethyl)-2-((2'-mercaptoethyl)amino)acetamide]. Although these two complexes differ only by a single amine versus amidate ligand, their chemical properties are quite different. The stronger in-plane ligand field in the bisamidate complex (Ni(II)(L1))(2-) (2) results in an increase in the energies of the d --> d transitions and a considerably more negative oxidation potential. Furthermore, while the bisamidate complex (Ni(II)(L1))(2-) (2) readily forms a trinuclear species (Et(4)N)(2)({Ni(L1)}(2)Ni).H(2)O (1) and reacts rapidly with O(2), presumably via sulfoxidation, the mixed amine/amidate complex (Ni(II)(HL2))(-) (3) remains monomeric and is stable for days in air. Interestingly, the Ni(III) species of the bisamidate complex formed by chemical oxidation with I(2) can be detected by electron paramagnetic resonance (EPR) spectroscopy while the mixed amine/amidate complex immediately decomposes upon oxidation. To explain these experimentally observed properties, we performed S K-edge X-ray absorption spectroscopy and low-temperature (77 K) electronic absorption measurements as well as both hybrid density functional theory (hybrid-DFT) and spectroscopy oriented configuration interaction (SORCI) calculations. These studies demonstrate that the highest occupied molecular orbital (HOMO) of the bisamidate complex (Ni(II)(L1))(2-) (2) has more Ni character and is significantly destabilized relative to the mixed amine/amidate complex (Ni(II)(HL2))(-) (3) by approximately 6.2 kcal mol(-1). The consequence of this destabilization is manifested in the nucleophilic activation of the doubly filled HOMO, which makes (Ni(II)(L1))(2-) (2) significantly more reactive toward electrophiles such as O(2).

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Year:  2010        PMID: 20507077      PMCID: PMC2898278          DOI: 10.1021/ic9023053

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  63 in total

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Authors:  M J Maroney
Journal:  Curr Opin Chem Biol       Date:  1999-04       Impact factor: 8.822

2.  High-resolution X-ray emission and X-ray absorption spectroscopy.

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Authors:  Paul A Lindahl
Journal:  Biochemistry       Date:  2002-02-19       Impact factor: 3.162

4.  Nickel-Containing Carbon Monoxide Dehydrogenase/Acetyl-CoA Synthase(,).

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Journal:  Nat Struct Biol       Date:  2003-04

Review 6.  Quantum chemical calculations of spectroscopic properties of metalloproteins and model compounds: EPR and Mössbauer properties.

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7.  Singlet Oxygen and the Production of Sulfur Oxygenates of Nickel(II) and Palladium(II) Thiolates.

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Journal:  Inorg Chem       Date:  1997-04-23       Impact factor: 5.165

8.  Thiolate-bridged nickel-copper complexes: a binuclear model for the catalytic site of acetyl coenzyme a synthase?

Authors:  Rangan Krishnan; Janis K Voo; Charles G Riordan; Lev Zahkarov; Arnold L Rheingold
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9.  A Ni-Fe-Cu center in a bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase.

Authors:  Tzanko I Doukov; Tina M Iverson; Javier Seravalli; Stephen W Ragsdale; Catherine L Drennan
Journal:  Science       Date:  2002-10-18       Impact factor: 47.728

10.  Unique reactivity of a tetradentate N(2)S(2) complex of nickel: intermediates in the production of sulfur oxygenates.

Authors:  Vincent E Kaasjager; Elisabeth Bouwman; S Gorter; Jan Reedijk; Craig A Grapperhaus; Joseph H Reibenspies; Jason J Smee; Marcetta Y Darensbourg; Agnes Derecskei-Kovacs; Lisa M Thomson
Journal:  Inorg Chem       Date:  2002-04-08       Impact factor: 5.165

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  12 in total

1.  Dipeptide-based models of nickel superoxide dismutase: solvent effects highlight a critical role to Ni-S bonding and active site stabilization.

Authors:  Eric M Gale; Darin M Cowart; Robert A Scott; Todd C Harrop
Journal:  Inorg Chem       Date:  2011-09-20       Impact factor: 5.165

2.  Accessing Ni(III)-thiolate versus Ni(II)-thiyl bonding in a family of Ni-N2S2 synthetic models of NiSOD.

Authors:  Ellen P Broering; Stephanie Dillon; Eric M Gale; Ramsey A Steiner; Joshua Telser; Thomas C Brunold; Todd C Harrop
Journal:  Inorg Chem       Date:  2015-04-02       Impact factor: 5.165

Review 3.  Frontiers, opportunities, and challenges in biochemical and chemical catalysis of CO2 fixation.

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Journal:  Chem Rev       Date:  2013-06-14       Impact factor: 60.622

4.  Redesign of a Copper Storage Protein into an Artificial Hydrogenase.

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Journal:  ACS Catal       Date:  2019-05-16       Impact factor: 13.084

5.  X-ray Absorption Spectroscopy Reveals an Organometallic Ni-C Bond in the CO-Treated Form of Acetyl-CoA Synthase.

Authors:  Mehmet Can; Logan J Giles; Stephen W Ragsdale; Ritimukta Sarangi
Journal:  Biochemistry       Date:  2017-02-23       Impact factor: 3.162

Review 6.  Structure, function, and biosynthesis of nickel-dependent enzymes.

Authors:  Marila Alfano; Christine Cavazza
Journal:  Protein Sci       Date:  2020-02-18       Impact factor: 6.725

Review 7.  Metal centers in the anaerobic microbial metabolism of CO and CO2.

Authors:  Güneş Bender; Elizabeth Pierce; Jeffrey A Hill; Joseph E Darty; Stephen W Ragsdale
Journal:  Metallomics       Date:  2011-06-06       Impact factor: 4.526

8.  Infrared and EPR spectroscopic characterization of a Ni(I) species formed by photolysis of a catalytically competent Ni(I)-CO intermediate in the acetyl-CoA synthase reaction.

Authors:  Güneş Bender; Troy A Stich; Lifen Yan; R David Britt; Stephen P Cramer; Stephen W Ragsdale
Journal:  Biochemistry       Date:  2010-09-07       Impact factor: 3.162

9.  The Role of Mixed Amine/Amide Ligation in Nickel Superoxide Dismutase.

Authors:  Hsin-Ting Huang; Stephanie Dillon; Kelly C Ryan; Julius O Campecino; Olivia E Watkins; Diane E Cabelli; Thomas C Brunold; Michael J Maroney
Journal:  Inorg Chem       Date:  2018-10-03       Impact factor: 5.165

10.  Embedding the Ni-SOD mimetic Ni-NCC within a polypeptide sequence alters the specificity of the reaction pathway.

Authors:  Mary E Krause; Amanda M Glass; Timothy A Jackson; Jennifer S Laurence
Journal:  Inorg Chem       Date:  2012-12-10       Impact factor: 5.165

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