Literature DB >> 20504770

Aminoacyl transfer rate dictates choice of editing pathway in threonyl-tRNA synthetase.

Anand Minajigi1, Christopher S Francklyn.   

Abstract

Aminoacyl-tRNA synthetases hydrolyze aminoacyl adenylates and aminoacyl-tRNAs formed from near-cognate amino acids, thereby increasing translational fidelity. The contributions of pre- and post-transfer editing pathways to the fidelity of Escherichia coli threonyl-tRNA synthetase (ThrRS) were investigated by rapid kinetics. In the pre-steady state, asymmetric activation of cognate threonine and noncognate serine was observed in the active sites of dimeric ThrRS, with similar rates of activation. In the absence of tRNA, seryl-adenylate was hydrolyzed 29-fold faster by the ThrRS catalytic domain than threonyl-adenylate. The rate of seryl transfer to cognate tRNA was only 2-fold slower than threonine. Experiments comparing the rate of ATP consumption to the rate of aminoacyl-tRNA(AA) formation demonstrated that pre-transfer hydrolysis contributes to proofreading only when the rate of transfer is slowed significantly. Thus, the relative contributions of pre- and post-transfer editing in ThrRS are subject to modulation by the rate of aminoacyl transfer.

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Year:  2010        PMID: 20504770      PMCID: PMC2911285          DOI: 10.1074/jbc.M110.105320

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  45 in total

1.  Transfer RNA-dependent translocation of misactivated amino acids to prevent errors in protein synthesis.

Authors:  T K Nomanbhoy; T L Hendrickson; P Schimmel
Journal:  Mol Cell       Date:  1999-10       Impact factor: 17.970

2.  Zinc ion mediated amino acid discrimination by threonyl-tRNA synthetase.

Authors:  R Sankaranarayanan; A C Dock-Bregeon; B Rees; M Bovee; J Caillet; P Romby; C S Francklyn; D Moras
Journal:  Nat Struct Biol       Date:  2000-06

Review 3.  Aminoacyl-tRNA synthesis.

Authors:  M Ibba; D Soll
Journal:  Annu Rev Biochem       Date:  2000       Impact factor: 23.643

4.  Partitioning of tRNA-dependent editing between pre- and post-transfer pathways in class I aminoacyl-tRNA synthetases.

Authors:  Morana Dulic; Nevena Cvetesic; John J Perona; Ita Gruic-Sovulj
Journal:  J Biol Chem       Date:  2010-05-24       Impact factor: 5.157

5.  Experimental evidence for kinetic proofreading in the aminoacylation of tRNA by synthetase.

Authors:  T Yamane; J J Hopfield
Journal:  Proc Natl Acad Sci U S A       Date:  1977-06       Impact factor: 11.205

6.  The variety of intraspecific misacylations carried out by isoleucyl transfer ribonucleic acid synthetase of Escherichia coli.

Authors:  M Yarus; M Mertes
Journal:  J Biol Chem       Date:  1973-10-10       Impact factor: 5.157

7.  Transfer RNA-mediated editing in threonyl-tRNA synthetase. The class II solution to the double discrimination problem.

Authors:  A Dock-Bregeon; R Sankaranarayanan; P Romby; J Caillet; M Springer; B Rees; C S Francklyn; C Ehresmann; D Moras
Journal:  Cell       Date:  2000-12-08       Impact factor: 41.582

8.  Misactivated amino acids translocate at similar rates across surface of a tRNA synthetase.

Authors:  T K Nomanbhoy; P R Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

9.  Hydrolytic editing by a class II aminoacyl-tRNA synthetase.

Authors:  P J Beuning; K Musier-Forsyth
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-01       Impact factor: 11.205

10.  Editing mechanisms in protein synthesis. Rejection of valine by the isoleucyl-tRNA synthetase.

Authors:  A R Fersht
Journal:  Biochemistry       Date:  1977-03-08       Impact factor: 3.162

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  24 in total

1.  The α-amino group of the threonine substrate as the general base during tRNA aminoacylation: a new version of substrate-assisted catalysis predicted by hybrid DFT.

Authors:  Wenjuan Huang; Eric A C Bushnell; Christopher S Francklyn; James W Gauld
Journal:  J Phys Chem A       Date:  2011-09-26       Impact factor: 2.781

2.  Kinetic partitioning between synthetic and editing pathways in class I aminoacyl-tRNA synthetases occurs at both pre-transfer and post-transfer hydrolytic steps.

Authors:  Nevena Cvetesic; John J Perona; Ita Gruic-Sovulj
Journal:  J Biol Chem       Date:  2012-05-30       Impact factor: 5.157

3.  Partitioning of tRNA-dependent editing between pre- and post-transfer pathways in class I aminoacyl-tRNA synthetases.

Authors:  Morana Dulic; Nevena Cvetesic; John J Perona; Ita Gruic-Sovulj
Journal:  J Biol Chem       Date:  2010-05-24       Impact factor: 5.157

Review 4.  Cellular mechanisms that control mistranslation.

Authors:  Noah M Reynolds; Beth A Lazazzera; Michael Ibba
Journal:  Nat Rev Microbiol       Date:  2010-12       Impact factor: 60.633

5.  The mechanism of pre-transfer editing in yeast mitochondrial threonyl-tRNA synthetase.

Authors:  Jiqiang Ling; Kaitlyn M Peterson; Ivana Simonovic; Dieter Söll; Miljan Simonovic
Journal:  J Biol Chem       Date:  2012-07-06       Impact factor: 5.157

6.  Amino-acid-dependent shift in tRNA synthetase editing mechanisms.

Authors:  Jaya Sarkar; Susan A Martinis
Journal:  J Am Chem Soc       Date:  2011-10-31       Impact factor: 15.419

7.  Fidelity escape by the unnatural amino acid β-hydroxynorvaline: an efficient substrate for Escherichia coli threonyl-tRNA synthetase with toxic effects on growth.

Authors:  Anand Minajigi; Bin Deng; Christopher S Francklyn
Journal:  Biochemistry       Date:  2011-01-24       Impact factor: 3.162

8.  The tRNA A76 Hydroxyl Groups Control Partitioning of the tRNA-dependent Pre- and Post-transfer Editing Pathways in Class I tRNA Synthetase.

Authors:  Nevena Cvetesic; Mirna Bilus; Ita Gruic-Sovulj
Journal:  J Biol Chem       Date:  2015-04-14       Impact factor: 5.157

Review 9.  Progress and challenges in aminoacyl-tRNA synthetase-based therapeutics.

Authors:  Christopher S Francklyn; Patrick Mullen
Journal:  J Biol Chem       Date:  2019-01-22       Impact factor: 5.157

10.  The physiological target for LeuRS translational quality control is norvaline.

Authors:  Nevena Cvetesic; Andrés Palencia; Ivan Halasz; Stephen Cusack; Ita Gruic-Sovulj
Journal:  EMBO J       Date:  2014-06-16       Impact factor: 11.598

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