Literature DB >> 20499085

Arabidopsis DDB1a and DDB1b are critical for embryo development.

Anne Bernhardt1, Sutton Mooney, Hanjo Hellmann.   

Abstract

DNA Damaged binding protein 1 (DDB1) is a highly conserved protein of around 125 kDa. It serves as a substrate adaptor subunit to a CUL4-based E3 ubiquitin ligase within the ubiquitin proteasome pathway. However, based on a set of three beta-propellers, the protein is able to mediate various protein-protein interactions, suggesting that it participates in many developmental and physiological processes in the plant. Arabidopsis encodes for two closely related DDB1 proteins, named DDB1a and DDB1b. While loss-of DDB1a does not severely affect development, loss-of DDB1b has been reported to result in an embryo lethal phenotype. Here we describe two novel ddb1b T-DNA insertion mutants that are not embryo lethal, which we utilized as genetic tools to dissect DDB1b from DDB1a function. Information generated by these studies showed that the C-terminal part of the DDB1 proteins is critical for specific protein-protein interactions. In addition, we demonstrated that DDB1a, like DDB1b, is critical for embryo development, and that both proteins have distinct functions in whole plant development.

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Year:  2010        PMID: 20499085     DOI: 10.1007/s00425-010-1195-9

Source DB:  PubMed          Journal:  Planta        ISSN: 0032-0935            Impact factor:   4.116


  36 in total

Review 1.  MSI1-like proteins: an escort service for chromatin assembly and remodeling complexes.

Authors:  Lars Hennig; Romaric Bouveret; Wilhelm Gruissem
Journal:  Trends Cell Biol       Date:  2005-06       Impact factor: 20.808

2.  Structure of DDB1 in complex with a paramyxovirus V protein: viral hijack of a propeller cluster in ubiquitin ligase.

Authors:  Ti Li; Xiujuan Chen; Kenneth C Garbutt; Pengbo Zhou; Ning Zheng
Journal:  Cell       Date:  2006-01-13       Impact factor: 41.582

3.  Molecular architecture and assembly of the DDB1-CUL4A ubiquitin ligase machinery.

Authors:  Stephane Angers; Ti Li; Xianhua Yi; Michael J MacCoss; Randall T Moon; Ning Zheng
Journal:  Nature       Date:  2006-10-05       Impact factor: 49.962

4.  CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana.

Authors:  Anne Bernhardt; Esther Lechner; Perdita Hano; Verena Schade; Monika Dieterle; Marco Anders; Manu Jody Dubin; Giovanna Benvenuto; Chris Bowler; Pascal Genschik; Hanjo Hellmann
Journal:  Plant J       Date:  2006-06-22       Impact factor: 6.417

Review 5.  DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.

Authors:  Jennifer Lee; Pengbo Zhou
Journal:  Mol Cell       Date:  2007-06-22       Impact factor: 17.970

6.  DNA damage binding protein component DDB1 participates in nucleotide excision repair through DDB2 DNA-binding and cullin 4A ubiquitin ligase activity.

Authors:  Jinyou Li; Qi-En Wang; Qianzheng Zhu; Mohamed A El-Mahdy; Gulzar Wani; Mette Praetorius-Ibba; Altaf A Wani
Journal:  Cancer Res       Date:  2006-09-01       Impact factor: 12.701

7.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.

Authors:  S J Clough; A F Bent
Journal:  Plant J       Date:  1998-12       Impact factor: 6.417

8.  The DDB1a interacting proteins ATCSA-1 and DDB2 are critical factors for UV-B tolerance and genomic integrity in Arabidopsis thaliana.

Authors:  Sascha Biedermann; Hanjo Hellmann
Journal:  Plant J       Date:  2010-02-01       Impact factor: 6.417

9.  Genome-wide insertional mutagenesis of Arabidopsis thaliana.

Authors:  José M Alonso; Anna N Stepanova; Thomas J Leisse; Christopher J Kim; Huaming Chen; Paul Shinn; Denise K Stevenson; Justin Zimmerman; Pascual Barajas; Rosa Cheuk; Carmelita Gadrinab; Collen Heller; Albert Jeske; Eric Koesema; Cristina C Meyers; Holly Parker; Lance Prednis; Yasser Ansari; Nathan Choy; Hashim Deen; Michael Geralt; Nisha Hazari; Emily Hom; Meagan Karnes; Celene Mulholland; Ral Ndubaku; Ian Schmidt; Plinio Guzman; Laura Aguilar-Henonin; Markus Schmid; Detlef Weigel; David E Carter; Trudy Marchand; Eddy Risseeuw; Debra Brogden; Albana Zeko; William L Crosby; Charles C Berry; Joseph R Ecker
Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

10.  Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex.

Authors:  Andrea Scrima; Renata Konícková; Bryan K Czyzewski; Yusuke Kawasaki; Philip D Jeffrey; Regina Groisman; Yoshihiro Nakatani; Shigenori Iwai; Nikola P Pavletich; Nicolas H Thomä
Journal:  Cell       Date:  2008-12-26       Impact factor: 41.582

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  18 in total

Review 1.  Regulation of abiotic stress signal transduction by E3 ubiquitin ligases in Arabidopsis.

Authors:  Jae-Hoon Lee; Woo Taek Kim
Journal:  Mol Cells       Date:  2011-01-18       Impact factor: 5.034

2.  ABD1 is an Arabidopsis DCAF substrate receptor for CUL4-DDB1-based E3 ligases that acts as a negative regulator of abscisic acid signaling.

Authors:  Kyoung-In Seo; Jae-Hoon Lee; Cynthia D Nezames; Shangwei Zhong; Eunyoung Song; Myung-Ok Byun; Xing Wang Deng
Journal:  Plant Cell       Date:  2014-02-21       Impact factor: 11.277

3.  Composition, roles, and regulation of cullin-based ubiquitin e3 ligases.

Authors:  Christina M Choi; William M Gray; Sutton Mooney; Hanjo Hellmann
Journal:  Arabidopsis Book       Date:  2014-11-17

4.  Arabidopsis WD repeat domain55 Interacts with DNA damaged binding protein1 and is required for apical patterning in the embryo.

Authors:  Katrine N Bjerkan; Sabrina Jung-Roméo; Gerd Jürgens; Pascal Genschik; Paul E Grini
Journal:  Plant Cell       Date:  2012-03-23       Impact factor: 11.277

5.  Remarkable Evolutionary Conservation of Antiobesity ADIPOSE/WDTC1 Homologs in Animals and Plants.

Authors:  Eric Ducos; Valentin Vergès; Thomas Dugé de Bernonville; Nathalie Blanc; Nathalie Giglioli-Guivarc'h; Christelle Dutilleul
Journal:  Genetics       Date:  2017-06-29       Impact factor: 4.562

6.  Selection-driven divergence after gene duplication in Arabidopsis thaliana.

Authors:  Toni I Gossmann; Karl J Schmid
Journal:  J Mol Evol       Date:  2011-10-02       Impact factor: 2.395

Review 7.  Protecting DNA from errors and damage: an overview of DNA repair mechanisms in plants compared to mammals.

Authors:  Claudia P Spampinato
Journal:  Cell Mol Life Sci       Date:  2016-12-20       Impact factor: 9.261

8.  The conserved factor DE-ETIOLATED 1 cooperates with CUL4-DDB1DDB2 to maintain genome integrity upon UV stress.

Authors:  Enric Castells; Jean Molinier; Giovanna Benvenuto; Clara Bourbousse; Gerald Zabulon; Antoine Zalc; Stefano Cazzaniga; Pascal Genschik; Fredy Barneche; Chris Bowler
Journal:  EMBO J       Date:  2011-02-08       Impact factor: 11.598

9.  Chromoplast-specific carotenoid-associated protein appears to be important for enhanced accumulation of carotenoids in hp1 tomato fruits.

Authors:  Himabindu Vasuki Kilambi; Rakesh Kumar; Rameshwar Sharma; Yellamaraju Sreelakshmi
Journal:  Plant Physiol       Date:  2013-02-11       Impact factor: 8.340

10.  Arabidopsis DDB1-CUL4 E3 ligase complexes in det1 salt/osmotic stress resistant germination.

Authors:  V C Dilukshi Fernando; Dana F Schroeder
Journal:  Plant Signal Behav       Date:  2016-09
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