Literature DB >> 20493676

Genomic neighbourhood and the regulation of gene expression.

Subhajyoti De1, M Madan Babu.   

Abstract

'Genomic neighbourhoods' or 'domains' are segments of the genome with specific characteristics associated with them (e.g. epigenetic modifications, interaction with nuclear lamina, etc.). Genomic neighbourhood influences the transcriptional activity of genes within it, and genetic manipulation or natural mutations that alter the neighbourhood of a gene have been shown to affect its expression. Several molecular mechanisms or factors (e.g. non-allelic homologous recombination, mobile elements, etc.) can alter the neighbourhood of genes. Over different time-scales such events have been suggested to contribute to speciation, introduce diversity in a population, result in germ-line and somatic mosaicism, and cause specific diseases. Understanding the role of genomic neighbourhood on gene regulation has fundamental implications for evolution, development, disease and genetic engineering. Copyright 2010 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2010        PMID: 20493676     DOI: 10.1016/j.ceb.2010.04.004

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  19 in total

1.  Minimal effect of gene clustering on expression in Escherichia coli.

Authors:  Lusha W Liang; Razika Hussein; Dena H S Block; Han N Lim
Journal:  Genetics       Date:  2012-12-05       Impact factor: 4.562

2.  Effect of nuclear architecture on the efficiency of double-strand break repair.

Authors:  Neta Agmon; Batia Liefshitz; Christophe Zimmer; Emmanuelle Fabre; Martin Kupiec
Journal:  Nat Cell Biol       Date:  2013-05-05       Impact factor: 28.824

3.  Methylation status of promoter 1 region of GDNF gene in human glioma cells.

Authors:  Maohua Chen; Zhenghao Liu; Yuefei Deng; Xianglin Chen; Jianmin Zhang
Journal:  Int J Clin Exp Med       Date:  2014-07-15

4.  Chromosomal position effects are linked to sir2-mediated variation in transcriptional burst size.

Authors:  Cory Batenchuk; Simon St-Pierre; Lioudmila Tepliakova; Samyuktha Adiga; Anna Szuto; Nazir Kabbani; John C Bell; Kristin Baetz; Mads Kærn
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

5.  Large copy number variations in combination with point mutations in the TYMP and SCO2 genes found in two patients with mitochondrial disorders.

Authors:  Alžběta Vondráčková; Kateřina Veselá; Hana Kratochvílová; Vendula Kučerová Vidrová; Kamila Vinšová; Viktor Stránecký; Tomáš Honzík; Hana Hansíková; Jiří Zeman; Markéta Tesařová
Journal:  Eur J Hum Genet       Date:  2013-07-10       Impact factor: 4.246

6.  Neighbourhood continuity is not required for correct testis gene expression in Drosophila.

Authors:  Lisa A Meadows; Yuk Sang Chan; John Roote; Steven Russell
Journal:  PLoS Biol       Date:  2010-11-30       Impact factor: 8.029

7.  Selection upon genome architecture: conservation of functional neighborhoods with changing genes.

Authors:  Fátima Al-Shahrour; Pablo Minguez; Tomás Marqués-Bonet; Elodie Gazave; Arcadi Navarro; Joaquín Dopazo
Journal:  PLoS Comput Biol       Date:  2010-10-07       Impact factor: 4.475

Review 8.  Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review.

Authors:  Leo Lahti; Martin Schäfer; Hans-Ulrich Klein; Silvio Bicciato; Martin Dugas
Journal:  Brief Bioinform       Date:  2012-03-22       Impact factor: 11.622

9.  A common 56-kilobase deletion in a primate-specific segmental duplication creates a novel butyrophilin-like protein.

Authors:  Johanna Aigner; Sergi Villatoro; Raquel Rabionet; Jaume Roquer; Jordi Jiménez-Conde; Eulàlia Martí; Xavier Estivill
Journal:  BMC Genet       Date:  2013-07-06       Impact factor: 2.797

10.  Regulatory consequences of gene translocation in bacteria.

Authors:  Dena H S Block; Razika Hussein; Lusha W Liang; Han N Lim
Journal:  Nucleic Acids Res       Date:  2012-07-24       Impact factor: 16.971

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