Literature DB >> 16844709

SynView: a GBrowse-compatible approach to visualizing comparative genome data.

Haiming Wang1, Yanqi Su, Aaron J Mackey, Eileen T Kraemer, Jessica C Kissinger.   

Abstract

UNLABELLED: We present SynView, a simple and generic approach to dynamically visualize multi-species comparative genome data. It is a light-weight application based on the popular and configurable web-based GBrowse framework. It can be used with a variety of databases and provides the user with a high degree of interactivity. The tool is written in Perl and runs on top of the GBrowse framework. It is in use in the PlasmoDB (http://www.PlasmoDB.org) and the CryptoDB (http://www.CryptoDB.org) projects and can be easily integrated into other cross-species comparative genome projects. AVAILABILITY: The program and instructions are freely available at http://www.ApiDB.org/apps/SynView/ CONTACT: jkissing@uga.edu.

Mesh：

Year:  2006        PMID： 16844709     DOI： 10.1093/bioinformatics/btl389

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  18 in total

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