Literature DB >> 20476751

Conformational selection in the recognition of the snurportin importin beta binding domain by importin beta.

Anshul Bhardwaj1, Gino Cingolani.   

Abstract

The structural flexibility of beta-karyopherins is critical to mediate the interaction with transport substrates, nucleoporins, and the GTPase Ran. In this paper, we provide structural evidence that the molecular recognition of the transport adaptor snurportin by importin beta follows the population selection mechanism. We have captured two drastically different conformations of importin beta bound to the snurportin importin beta binding domain trapped in the same crystallographic asymmetric unit. We propose the population selection may be a general mechanism used by beta-karyopherins to recognize transport substrates.

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Year:  2010        PMID: 20476751      PMCID: PMC6013741          DOI: 10.1021/bi100292y

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  31 in total

1.  Nuclear import factors importin alpha and importin beta undergo mutually induced conformational changes upon association.

Authors:  G Cingolani; H A Lashuel; L Gerace; C W Müller
Journal:  FEBS Lett       Date:  2000-11-10       Impact factor: 4.124

2.  Structural basis for the assembly of a nuclear export complex.

Authors:  Yoshiyuki Matsuura; Murray Stewart
Journal:  Nature       Date:  2004-12-16       Impact factor: 49.962

3.  The structure of the nuclear export receptor Cse1 in its cytosolic state reveals a closed conformation incompatible with cargo binding.

Authors:  Atlanta Cook; Elena Fernandez; Doris Lindner; Judith Ebert; Gabriel Schlenstedt; Elena Conti
Journal:  Mol Cell       Date:  2005-04-29       Impact factor: 17.970

4.  Atomic resolution structures in nuclear transport.

Authors:  Katherine E Süel; Ahmet E Cansizoglu; Yuh Min Chook
Journal:  Methods       Date:  2006-08       Impact factor: 3.608

5.  A highly strained nuclear conformation of the exportin Cse1p revealed by molecular dynamics simulations.

Authors:  Ulrich Zachariae; Helmut Grubmüller
Journal:  Structure       Date:  2006-09       Impact factor: 5.006

6.  Conformational heterogeneity of karyopherin beta2 is segmental.

Authors:  Ahmet E Cansizoglu; Yuh Min Chook
Journal:  Structure       Date:  2007-11       Impact factor: 5.006

7.  Structures of the tRNA export factor in the nuclear and cytosolic states.

Authors:  Atlanta G Cook; Noemi Fukuhara; Martin Jinek; Elena Conti
Journal:  Nature       Date:  2009-09-03       Impact factor: 49.962

8.  Structural basis for leucine-rich nuclear export signal recognition by CRM1.

Authors:  Xiuhua Dong; Anindita Biswas; Katherine E Süel; Laurie K Jackson; Rita Martinez; Hongmei Gu; Yuh Min Chook
Journal:  Nature       Date:  2009-04-01       Impact factor: 49.962

9.  Molecular basis for the recognition of snurportin 1 by importin beta.

Authors:  Gregory Mitrousis; Adam S Olia; Nancy Walker-Kopp; Gino Cingolani
Journal:  J Biol Chem       Date:  2008-01-09       Impact factor: 5.157

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  11 in total

1.  Structural basis for the nuclear export activity of Importin13.

Authors:  Marlene Grünwald; Daniela Lazzaretti; Fulvia Bono
Journal:  EMBO J       Date:  2013-02-22       Impact factor: 11.598

2.  MD simulations and FRET reveal an environment-sensitive conformational plasticity of importin-β.

Authors:  Kangkan Halder; Nicole Dölker; Qui Van; Ingo Gregor; Achim Dickmanns; Imke Baade; Ralph H Kehlenbach; Ralf Ficner; Jörg Enderlein; Helmut Grubmüller; Heinz Neumann
Journal:  Biophys J       Date:  2015-07-21       Impact factor: 4.033

3.  Interaction of the HIV-1 intasome with transportin 3 protein (TNPO3 or TRN-SR2).

Authors:  Ross Larue; Kushol Gupta; Christiane Wuensch; Nikolozi Shkriabai; Jacques J Kessl; Eric Danhart; Lei Feng; Oliver Taltynov; Frauke Christ; Gregory D Van Duyne; Zeger Debyser; Mark P Foster; Mamuka Kvaratskhelia
Journal:  J Biol Chem       Date:  2012-08-07       Impact factor: 5.157

4.  Structure of Importin13-Ubc9 complex: nuclear import and release of a key regulator of sumoylation.

Authors:  Marlene Grünwald; Fulvia Bono
Journal:  EMBO J       Date:  2010-12-07       Impact factor: 11.598

Review 5.  The importin β binding domain as a master regulator of nucleocytoplasmic transport.

Authors:  Kaylen Lott; Gino Cingolani
Journal:  Biochim Biophys Acta       Date:  2010-10-26

6.  Identification and characterization of Drosophila Snurportin reveals a role for the import receptor Moleskin/importin-7 in snRNP biogenesis.

Authors:  Amanda Hicks Natalizio; A Gregory Matera
Journal:  Mol Biol Cell       Date:  2013-07-24       Impact factor: 4.138

7.  Enriching Traditional Protein-protein Interaction Networks with Alternative Conformations of Proteins.

Authors:  Farideh Halakou; Emel Sen Kilic; Engin Cukuroglu; Ozlem Keskin; Attila Gursoy
Journal:  Sci Rep       Date:  2017-08-03       Impact factor: 4.379

Review 8.  The Role of Protein Disorder in Nuclear Transport and in Its Subversion by Viruses.

Authors:  Jacinta M Wubben; Sarah C Atkinson; Natalie A Borg
Journal:  Cells       Date:  2020-12-10       Impact factor: 6.600

9.  Comprehensive structure and functional adaptations of the yeast nuclear pore complex.

Authors:  Christopher W Akey; Digvijay Singh; Christna Ouch; Ignacia Echeverria; Ilona Nudelman; Joseph M Varberg; Zulin Yu; Fei Fang; Yi Shi; Junjie Wang; Daniel Salzberg; Kangkang Song; Chen Xu; James C Gumbart; Sergey Suslov; Jay Unruh; Sue L Jaspersen; Brian T Chait; Andrej Sali; Javier Fernandez-Martinez; Steven J Ludtke; Elizabeth Villa; Michael P Rout
Journal:  Cell       Date:  2022-01-03       Impact factor: 66.850

10.  Importin β Can Bind Hepatitis B Virus Core Protein and Empty Core-Like Particles and Induce Structural Changes.

Authors:  Chao Chen; Joseph Che-Yen Wang; Elizabeth E Pierson; David Z Keifer; Mildred Delaleau; Lara Gallucci; Christian Cazenave; Michael Kann; Martin F Jarrold; Adam Zlotnick
Journal:  PLoS Pathog       Date:  2016-08-12       Impact factor: 6.823

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